getSmallMolSpectra: Retrieve small molecule and matrix peak lists and make...

Description Usage Arguments Value

View source: R/smallMoleculeSpectraFunctions.R

Description

Retrieve small molecule and matrix peak lists and make consensus peak lists

Usage

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getSmallMolSpectra(pool, sampleIDs = NULL, dendrogram, brushInputs,
  matrixIDs = NULL, peakPercentPresence, lowerMassCutoff,
  upperMassCutoff, minSNR)

Arguments

pool

pool

sampleIDs

character vector of IDs (currently not used)

dendrogram

protein dendrogram that was brushed

brushInputs

brusked dendrogram outputs

matrixIDs

sampleID that will be used as a matrix

peakPercentPresence

peaks whose frequency of occurence in replicates below this are dropped

lowerMassCutoff

lower mass to retain

upperMassCutoff

upper mass to retain

minSNR

minimum SNR a peak must have to be retained

Value

a list containg two lists of MALDIquant peak objects "samplePeaks" and "matrixPeaks"


chasemc/tempRepo documentation built on April 8, 2019, 10:22 p.m.