Man pages for chemokine/OmicsSBGN
Overlay omics data onto SBGN pathway diagram
| arc-class | An object to store arc information. |
| change.data.id | Change the data IDs of input omics data |
| change.ids | Change input IDs to another ID type |
| download.sbgn.file | Download pre-generated SBGN-ML file from GitHub |
| find.pathways | Retrieve pathways from keywords |
| get.mol.list | Retrieve gene list or compound list from collected databases |
| glyph-class | An object to store glyph information |
| highlight.arcs | Highlight arcs by arc class |
| highlight.nodes | Highlight input nodes |
| highlight.path | Given two nodes, find the shortest path between them and... |
| load.mapping.table | Generate ID mapping table from input and output ID types. If... |
| mapped.ids | IDs mappable by SBGNview |
| output.file | Retrieve output file information from a SBGNview object |
| output.file-set | Set output file information for a SBGNview object |
| pathways.info | Information of collected pathways |
| pathways.stat | Number of pathways collected |
| plus-.SBGNview | Generic function to modify SBGN graph features |
| print.SBGNview | A wrapper to run function 'render.sbgn' for all pathways in a... |
| render.sbgn | Overlay omics data on a SBGN pathway graph and output image... |
| sbgn.nodes | Extract glyph information |
| SBGNview | Overlay omics data on SBGN pathway diagram and output image... |
| SBGNview.obj | Demo SBGNview object |
| spline.arc-class | An object to store information for spline formated arcs. |
