TornadoPlots-CNV_single-method: Plot Tornado Plots

In chenhong-dkfz/tornado.test.1: Tornado Plot for CNV

Description

Plot Tornado Plots

Usage

## S4 method for signature 'CNV_single'
TornadoPlots(object, gene.name, title, legend,
  pixel.per.cnv, color, gene.anno, start.gene, end.gene, color.method,
  sort.method, SaveAsObject, drop.low.amp, multi_panel, zoomed,
  font.size.factor, path, format, orient)

Arguments

gene.name	gene name. Character.
title	the title shown in the plots. Character.
legend	type of legend display. Character.
pixel.per.cnv	thickness of CNV lines in pixel. Int.
color	colors of tornado.List.
color.method	the method for coloring the CNVs. Character.
sort.method	the method for coloring the CNVs. Character.
SaveAsObject	if true, the plot will be saved in R object. If false, it will be saved in a file. Boolean.
drop.low.amp	If it is TRUE (default), the amplifications with CNV<5 are not shown in plot. Boolean.
multi_panel	If true, a multiple panel plot will be shown.
zoomed	indicates if plot will be shown in zoomed-in sight. It should be "global","region" or "gene".Character
font.size.factor	multiply for rescale font size. Double.
path	path of output plot. character.
orient	vertical or horizontal arrange CNVs and chromosome. It should be "v" or "h".
CNV.input	Output of MakeData function, Grange object
formath	output plot file type. character.

chenhong-dkfz/tornado.test.1 documentation built on Dec. 28, 2021, 7:28 p.m.