TornadoPlots-CNV_twin-method: Plot Tornado Twin Plots

In chenhong-dkfz/tornado.test.1: Tornado Plot for CNV

Description

Plot Tornado Twin Plots

Usage

## S4 method for signature 'CNV_twin'
TornadoPlots(object, gene.name, title, legend.type,
  legend.names, pixel.per.cnv, color, cnv.type_1, cnv.type_2, gene.anno,
  start.gene, end.gene, color.method, sort.method, SaveAsObject,
  multi_panel, font.size.factor, file, format, path, orient, zoomed,
  drop.low.amp)

Arguments

gene.name	gene name. Character.
legend.names	type of legend display. Character.
color	colors of tornado.List.
color.method	the method for coloring the CNVs. Character.
sort.method	the method for coloring the CNVs. Character.
SaveAsObject	if true, the plot will be saved in R object. If false, it will be saved in a file. Boolean.
multi_panel	If true, a multiple panel plot will be shown.
font.size.factor	multiply for rescale font size. Double.
path	path of output plot. character.
orient	vertical or horizontal arrange CNVs and chromosome. It should be "v" or "h".
zoomed	if true, the plot will be shown in zoomed-in sight. Boolean.
drop.low.amp	If it is TRUE (default), the amplifications with CNV<5 are not shown in plot. Boolean.
CNV.input	Grange object
legend	type of legend display. Character.
formath	output plot file type. character.

chenhong-dkfz/tornado.test.1 documentation built on Dec. 28, 2021, 7:28 p.m.