API for chenlab-sj/nbid
Differential expression analysis using negative binomial with independent dispersions (NBID)
| Global functions | |
|---|---|
| DEUsingNBID | Man page Source code |
| MLENBDirect | Source code |
| MLETwoDispersions | Source code |
| MLEUnderH0EqualMean | Source code |
| NBDispersionAndLikelihood | Source code |
| NBGeneral | Source code |
| NBID | Man page Source code |
| NBIDNoCov | Source code |
| NBVsZINB | Source code |
| calculateBetaSecondDerivative | Source code |
| calculateDispersionBetaSecondDerivative | Source code |
| calculateDispersionDerivative | Source code |
| calculateDispersionSecondDerivative | Source code |
| checkCountContinuity | Source code |
| checkCountDistribution | Source code |
| checkCountDistributionPerGroup | Man page Source code |
| checkDEAnalysis | Source code |
| checkDataDistribution | Man page Source code |
| checkDistribution | Source code |
| checkGOF | Source code |
| checkMultipleGroups | Source code |
| combineTable | Source code |
| combineTable_test | Source code |
| downSampleVector | Source code |
| downsampleData | Man page Source code |
| estimateAndFitDispersionsWithCoxReid | Source code |
| fitZINB | Source code |
| goodnessOfFit | Man page Source code |
| goodnessOfFitMultiModels | Source code |
| goodnessOfFitOnData | Man page Source code |
| gradientDifferentLogDispersion | Source code |
| gradientDifferentLogDispersionNegative | Source code |
| hessianDifferentLogDispersion | Source code |
| likelihoodDifferentDispersion | Source code |
| likelihoodDifferentDispersionNegative | Source code |
| likelihoodDifferentLogDispersion | Source code |
| likelihoodDifferentLogDispersionNegative | Source code |
| likelihoodWithKnownDispersion | Source code |
| likelihoodWithKnownMean | Source code |
| main | Source code |
| profileLogLikelihood2 | Source code |
| pzinb | Source code |
| strictLess | Source code |
| summaryComparison | Man page Source code |
| testCommonDispersion | Source code |
| testCovariates | Source code |
