README.md

In chenlab-sj/nbid: Differential expression analysis using negative binomial with independent dispersions (NBID)

Negative binomial with independent dispersions (NBID) for UMI based scRNA-seq data

What is this repository for?

This package provides functions for modeling UMI based single cell RNA-seq data and differential expression analysis using negative binomial with independent dispersions

How do I get set up?

• Summary of set up

library(devtools)
install_github("chenlab-sj/nbid", build_vignettes = T)

• use the package

library(NBID)
help(package = "NBID")

Tutorial

vignette("NBID")

License

MIT license

chenlab-sj/nbid documentation built on Nov. 4, 2019, 8:50 a.m.