downsampleData: downsample a data matrix
In chenlab-sj/nbid: Differential expression analysis using negative binomial with independent dispersions (NBID)
Description
Usage
Arguments
Value
View source: R/goodnessOfFit.R
Description
downsample a data matrix
Usage
1
2
downsampleData(data, groupLabel, newTotalCounts = NULL,
newQuantile = 0.25)
Arguments
data
the gene*cell count matrix
groupLabel
the label of each cell
newTotalCounts
the UMI count to after downsampling
newQuantile
the common UMI after downsampling is set by the quantile
of the total UMI across cells before downsampling
If newTotalCounts is set, this parameter will be ignored
Value
A list of two components
data: this is the count matrix
groupLable: this is the group label of cells
chenlab-sj/nbid documentation built on Nov. 4, 2019, 8:50 a.m.
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Description Usage Arguments Value
View source: R/goodnessOfFit.R
Description
downsample a data matrix
Usage
1 2 | downsampleData(data, groupLabel, newTotalCounts = NULL,
newQuantile = 0.25)
|
Arguments
data |
the gene*cell count matrix |
groupLabel |
the label of each cell |
newTotalCounts |
the UMI count to after downsampling |
newQuantile |
the common UMI after downsampling is set by the quantile of the total UMI across cells before downsampling If newTotalCounts is set, this parameter will be ignored |
Value
A list of two components data: this is the count matrix groupLable: this is the group label of cells
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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