metabolites: Test data of metabolome

In chentianlu/gramm4R: Generalized correlation analysis and model construction strategy for metabolome and microbiome

Description

The test data for examples at function naiveGramm, Gramm,nlfitGramm

Usage

data("metabolites")

Format

The format is: Formal class 'SummarizedExperiment' [package "SummarizedExperiment"] with 5 slots ..@ colData :Formal class 'DataFrame' [package "S4Vectors"] with 6 slots .. .. ..@ rownames : chr [1:42] "B1" "B2" "B3" "B4" ... .. .. ..@ nrows : int 42 .. .. ..@ listData : Named list() .. .. ..@ elementType : chr "ANY" .. .. ..@ elementMetadata: NULL .. .. ..@ metadata : list() ..@ assays :Formal class 'SimpleAssays' [package "SummarizedExperiment"] with 1 slot .. .. ..@ data:Formal class 'SimpleList' [package "S4Vectors"] with 4 slots .. .. .. .. ..@ listData :List of 1 .. .. .. .. .. ..$ counts: num [1:40, 1:42] 8.75 3.31 5.09 1.49 6.2 8.81 2.37 1.76 4.47 2.18 ... .. .. .. .. .. .. ..- attr(*, "dimnames")=List of 2 .. .. .. .. .. .. .. ..$ : NULL .. .. .. .. .. .. .. ..$ : chr [1:42] "B1" "B2" "B3" "B4" ... .. .. .. .. ..@ elementType : chr "ANY" .. .. .. .. ..@ elementMetadata: NULL .. .. .. .. ..@ metadata : list() ..@ NAMES : NULL ..@ elementMetadata:Formal class 'DataFrame' [package "S4Vectors"] with 6 slots .. .. ..@ rownames : NULL .. .. ..@ nrows : int 40 .. .. ..@ listData :List of 1 .. .. .. ..$ X: Factor w/ 40 levels "Decadienylcarnitine",..: 16 35 31 25 3 4 1 8 9 6 ... .. .. ..@ elementType : chr "ANY" .. .. ..@ elementMetadata: NULL .. .. ..@ metadata : list() ..@ metadata : list()

Examples

data(metabolites)
## maybe str(metabolites) ; plot(metabolites) ...

chentianlu/gramm4R documentation built on July 6, 2021, 2:43 p.m.