Files in chgigot/epiphy
Analysis of Plant Disease Epidemics

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/betabinom.R R/data.R R/distr-fitting.R R/epiphy.R R/indices.R R/intensity-classes.R R/mapcomp.R R/mle-factory.R R/power-law.R R/sadie.R R/spatial-hier.R R/utils.R README.md
_pkgdown.yml
cran-comments.md
data-raw/aphids.csv
data-raw/arthropods.csv
data-raw/citrus_ctv_El-Realengo.csv
data-raw/citrus_ctv_IVIA3and4.csv
data-raw/citrus_ctv_IVIA6and7.csv
data-raw/codling_moths.csv
data-raw/dogwood_anthracnose.csv
data-raw/export-data.R
data-raw/hop_1_HpLV.csv
data-raw/hop_2_HpMV.csv
data-raw/hop_3_ApMV.csv
data-raw/offspring_survival.csv
data-raw/onion_bacterial_blight.csv
data-raw/pyrethrum_ray_blight.csv
data-raw/simulated_epidemics.csv
data-raw/tobacco_viruses.csv
data-raw/tomato_tswv_1928_4plots.csv
data-raw/tomato_tswv_1929_1plot.csv
data/aphids.rda
data/arthropods.rda
data/citrus_ctv.rda
data/codling_moths.rda
data/dogwood_anthracnose.rda
data/hop_viruses.rda
data/offspring_survival.rda
data/onion_bacterial_blight.rda
data/pyrethrum_ray_blight.rda
data/simulated_epidemics.rda
data/tobacco_viruses.rda
data/tomato_tswv.rda
docs/LICENSE-text.html
docs/articles/defs-and-eqns.html
docs/articles/epiphy.html
docs/articles/epiphy_files/figure-html/fit_distributions-1.png
docs/articles/epiphy_files/figure-html/fit_distributions-2.png
docs/articles/epiphy_files/figure-html/mapcomp-1.png
docs/articles/epiphy_files/figure-html/mapcomp-2.png
docs/articles/epiphy_files/figure-html/pipe_analyses-1.png
docs/articles/epiphy_files/figure-html/pipes2-1.png
docs/articles/epiphy_files/figure-html/plot_count-1.png
docs/articles/epiphy_files/figure-html/power_laws-1.png
docs/articles/epiphy_files/figure-html/power_laws-2.png
docs/articles/epiphy_files/figure-html/sadie-1.png
docs/articles/epiphy_files/figure-html/sadie-2.png
docs/articles/epiphy_files/figure-html/sadie-3.png
docs/articles/epiphy_files/figure-html/spatial_hierarchies-1.png
docs/articles/epiphy_files/figure-html/threshold_function-1.png
docs/articles/epiphy_files/figure-html/threshold_function-2.png
docs/articles/epiphy_files/figure-html/unnamed-chunk-1-1.png
docs/articles/epiphy_files/figure-html/unnamed-chunk-1-2.png
docs/articles/epiphy_files/figure-html/utilities_intensity-1.png
docs/articles/epiphy_files/figure-html/utilities_intensity-2.png
docs/articles/index.html
docs/articles/intro.html
docs/articles/intro_files/figure-html/fit_distributions-1.png
docs/articles/intro_files/figure-html/fit_distributions-2.png
docs/articles/intro_files/figure-html/mapcomp-1.png
docs/articles/intro_files/figure-html/mapcomp-2.png
docs/articles/intro_files/figure-html/pipe_analyses-1.png
docs/articles/intro_files/figure-html/pipes2-1.png
docs/articles/intro_files/figure-html/plot_count-1.png
docs/articles/intro_files/figure-html/power_laws-1.png
docs/articles/intro_files/figure-html/power_laws-2.png
docs/articles/intro_files/figure-html/sadie-1.png
docs/articles/intro_files/figure-html/sadie-2.png
docs/articles/intro_files/figure-html/sadie-3.png
docs/articles/intro_files/figure-html/spatial_hierarchies-1.png
docs/articles/intro_files/figure-html/threshold_function-1.png
docs/articles/intro_files/figure-html/threshold_function-2.png
docs/articles/intro_files/figure-html/unnamed-chunk-1-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-1-2.png
docs/articles/intro_files/figure-html/utilities_intensity-1.png
docs/articles/intro_files/figure-html/utilities_intensity-2.png
docs/articles/logo-epiphy-01.png
docs/authors.html
docs/docsearch.css
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BetaBinomial-1.png
docs/reference/BetaBinomial-2.png
docs/reference/BetaBinomial.html
docs/reference/a2a.html
docs/reference/agg_index.html
docs/reference/aphids.html
docs/reference/arthropods.html
docs/reference/as.data.frame.intensity.html
docs/reference/calpha.test.html
docs/reference/chisq.test.html
docs/reference/citrus_ctv.html
docs/reference/clump-1.png
docs/reference/clump-2.png
docs/reference/clump-3.png
docs/reference/clump-4.png
docs/reference/clump-5.png
docs/reference/clump-6.png
docs/reference/clump-7.png
docs/reference/clump.html
docs/reference/codling_moths.html
docs/reference/coef.smle.html
docs/reference/dogwood_anthracnose.html
docs/reference/epiphy.html
docs/reference/figures/logo.png
docs/reference/fit_two_distr-1.png
docs/reference/fit_two_distr-2.png
docs/reference/fit_two_distr-3.png
docs/reference/fit_two_distr-4.png
docs/reference/fit_two_distr.html
docs/reference/hop_viruses.html
docs/reference/indAndSub.html
docs/reference/index.html
docs/reference/intensity-1.png
docs/reference/intensity-2.png
docs/reference/intensity-3.png
docs/reference/intensity-4.png
docs/reference/intensity-5.png
docs/reference/intensity.html
docs/reference/is.intensity.html
docs/reference/iwao.html
docs/reference/link.html
docs/reference/logLik.smle.html
docs/reference/mapcomp-1.png
docs/reference/mapcomp-2.png
docs/reference/mapcomp.html
docs/reference/mapped_var.html
docs/reference/mapping.html
docs/reference/offspring_survival.html
docs/reference/onion_bacterial_blight.html
docs/reference/plot.power_law.html
docs/reference/power_law-1.png
docs/reference/power_law-2.png
docs/reference/power_law.html
docs/reference/pyrethrum_ray_blight.html
docs/reference/sadie-1.png
docs/reference/sadie-2.png
docs/reference/sadie-3.png
docs/reference/sadie-4.png
docs/reference/sadie.html
docs/reference/simulated_epidemics.html
docs/reference/smle.html
docs/reference/smle_wrappers.html
docs/reference/spatial_hier-1.png
docs/reference/spatial_hier.html
docs/reference/split.intensity.html
docs/reference/threshold.html
docs/reference/tobacco_viruses.html
docs/reference/tomato_tswv.html
docs/reference/vcov.smle.html
docs/reference/z.test.html
epiphy.Rproj
man/BetaBinomial.Rd man/a2a.Rd man/agg_index.Rd man/aphids.Rd man/arthropods.Rd man/as.data.frame.intensity.Rd man/calpha.test.Rd man/chisq.test.Rd man/citrus_ctv.Rd man/clump.Rd man/codling_moths.Rd man/coef.smle.Rd man/dogwood_anthracnose.Rd man/epiphy.Rd
man/figures/logo.png
man/fit_two_distr.Rd man/hop_viruses.Rd man/indAndSub.Rd man/intensity.Rd man/is.intensity.Rd man/link.Rd man/logLik.smle.Rd man/mapcomp.Rd man/mapped_var.Rd man/mapping.Rd man/offspring_survival.Rd man/onion_bacterial_blight.Rd man/power_law.Rd man/pyrethrum_ray_blight.Rd man/sadie.Rd man/simulated_epidemics.Rd man/smle.Rd man/smle_wrappers.Rd man/spatial_hier.Rd man/split.intensity.Rd man/threshold.Rd man/tobacco_viruses.Rd man/tomato_tswv.Rd man/vcov.smle.Rd man/z.test.Rd
src/.gitignore
src/RcppExports.cpp
src/mapcomp.cpp
src/sadie.cpp
vignettes/biblio.bib
vignettes/defs-and-eqns.Rmd vignettes/epiphy.Rmd
vignettes/phytopathology_v2.csl
chgigot/epiphy documentation built on July 7, 2018, 2:46 p.m.