Analysis of Plant Disease Epidemics

a2a | Easily switch between different power law formulations. |

agg_index | Several aggregation indices. |

aphids | Counts of aphids. |

arthropods | Counts of arthropods. |

as.data.frame.intensity | Coerce to a data frame. |

BetaBinomial | The beta-binomial distribution. |

calpha.test | C(alpha) test. |

chisq.test | Chi-squared test. |

citrus_ctv | Incidence of citrus tristeza virus (CTV) disease in three... |

clump | Regroup observational data into even clumps of individuals. |

codling_moths | Count of codling moth larvae. |

coef.smle | Extract Model Coefficients |

dogwood_anthracnose | Incidence of dogwood anthracnose. |

epiphy | 'epiphy': An R package to analyze plant disease epidemics. |

fit_two_distr | Maximum likelihood fitting of two distributions and... |

hop_viruses | Incidence of three viruses in an Australian hop garden. |

indAndSub | Retrieve vector or array indices |

intensity | Construct count, incidence and severity objects. |

is.intensity | Test if an object is of class 'intensity' or one of its... |

link | Some link functions. |

logLik.smle | Extract log-likelihood |

mapcomp | Map Comparison procedure. |

mapped_var | Existing variable mappings. |

mapping | Construct data mappings. |

offspring_survival | Offspring survival of rats experiencing different diets. |

onion_bacterial_blight | Incidence of bacterial blight of onion. |

power_law | Taylor's and binary power laws. |

pyrethrum_ray_blight | Incidence of ray blight disease of pyrethrum. |

sadie | Spatial Analysis by Distance IndicEs (SADIE). |

simulated_epidemics | Examples of simulated epidemic data. |

smle | Simple maximum likelihood estimation |

smle_wrappers | Wrappers using maximum likelihood estimation for some... |

spatial_hier | Spatial hierarchy analysis. |

split.intensity | Divide into groups and reassemble. |

threshold | To go to higher level in the hierarchy. |

tobacco_viruses | Incidence of tobacco plants infected with viruses. |

tomato_tswv | Incidence of tomato spotted wilt virus (TSWV) disease in... |

vcov.smle | Calculate Variance-Covariance Matrix for a Fitted Model... |

z.test | Z-test. |

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