Man pages for chgigot/epiphy
Analysis of Plant Disease Epidemics
| a2a | Easily switch between different power law formulations. |
| agg_index | Several aggregation indices. |
| aphids | Counts of aphids. |
| arthropods | Counts of arthropods. |
| as.data.frame.intensity | Coerce to a data frame. |
| BetaBinomial | The beta-binomial distribution. |
| calpha.test | C(alpha) test. |
| chisq.test | Chi-squared test. |
| citrus_ctv | Incidence of citrus tristeza virus (CTV) disease in three... |
| clump | Regroup observational data into even clumps of individuals. |
| codling_moths | Count of codling moth larvae. |
| coef.smle | Extract Model Coefficients |
| dogwood_anthracnose | Incidence of dogwood anthracnose. |
| epiphy | 'epiphy': An R package to analyze plant disease epidemics. |
| fit_two_distr | Maximum likelihood fitting of two distributions and... |
| hop_viruses | Incidence of three viruses in an Australian hop garden. |
| indAndSub | Retrieve vector or array indices |
| intensity | Construct count, incidence and severity objects. |
| is.intensity | Test if an object is of class 'intensity' or one of its... |
| link | Some link functions. |
| logLik.smle | Extract log-likelihood |
| mapcomp | Map Comparison procedure. |
| mapped_var | Existing variable mappings. |
| mapping | Construct data mappings. |
| offspring_survival | Offspring survival of rats experiencing different diets. |
| onion_bacterial_blight | Incidence of bacterial blight of onion. |
| power_law | Taylor's and binary power laws. |
| pyrethrum_ray_blight | Incidence of ray blight disease of pyrethrum. |
| sadie | Spatial Analysis by Distance IndicEs (SADIE). |
| simulated_epidemics | Examples of simulated epidemic data. |
| smle | Simple maximum likelihood estimation |
| smle_wrappers | Wrappers using maximum likelihood estimation for some... |
| spatial_hier | Spatial hierarchy analysis. |
| split.intensity | Divide into groups and reassemble. |
| threshold | To go to higher level in the hierarchy. |
| tobacco_viruses | Incidence of tobacco plants infected with viruses. |
| tomato_tswv | Incidence of tomato spotted wilt virus (TSWV) disease in... |
| vcov.smle | Calculate Variance-Covariance Matrix for a Fitted Model... |
| z.test | Z-test. |
