modify_nodes: Change color of features of interest and remove labels
In chiasinL/STRINGutils: Additional utilities for STRINGdb

Description Usage Arguments Examples

View source: R/utils.R

modify_nodes modifies nodes of features of interest by assigning user specified colors to these nodes and "grey" to the others and removing labels from all nodes but those of interest. The idea and logic of this came from the change_STRING_colors.py from STRING website.

1	modify_nodes(xml, colors_vec)

`xml`	A `xml_document` as defined in `xml2`.
`colors_vec`	A named character vector of colors for feature of interest.

feature_of_int <- c("VSTM2L","TBC1D2","LENG9","TMEM27","TSPAN1",
"TNNC1","MGAM","TRIM22","KLK11","TYROBP")
colors_vec <- rep("rgb(101,226,11)", length(feature_of_int))
names(colors_vec) <- feature_of_int