Files in chjackson/adverse
Data on adverse events of adjuvant breast cancer treatment
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/data.R
R/data.R~
R/ll.binom.logit.R~
R/ll.cjbinom.logit.R
R/ll.cjbinom.logit.R~
R/nma.R
R/utils.R
R/utils.R~
README.md
adverse.Rproj
data-raw/README.md
data-raw/aecategs.txt
data-raw/data.r
data-raw/data_fit_horizon.r
data-raw/data_healthy_nct.r
data-raw/nmamodels.R
data/addtrtcoding.rda
data/aecategs.rda
data/aetypes.rda
data/baseae.rda
data/baseres.rda
data/bpae.rda
data/bpaearmtype.rda
data/bpaelong.rda
data/bpaelongsum.rda
data/bpaeprevma.rda
data/bpaeraw.rda
data/bpaeriskdiff.rda
data/bpcoding.rda
data/drugScale.rda
data/drugcols.rda
data/models_all.rda
data/models_complete.rda
data/nmadata.rda
data/studies.rda
data/treatments.rda
inst/doc/nmafever.R
inst/doc/nmafever.Rmd
inst/doc/nmafever.html
inst/doc/nmaother.R
inst/doc/plot.R
inst/doc/plot.Rmd
inst/doc/plot.html
inst/doc/plotsae.R
inst/doc/plotsae.Rmd
inst/doc/plotsae.html
inst/doc/sae.R
inst/doc/sae.Rmd
inst/doc/sae.html
inst/doc/trtvscon.R
inst/doc/trtvscon.Rmd
inst/doc/trtvscon.html
man/aecategs.Rd
man/bpaearmtype.Rd
man/bpaelong.Rd
man/bpaeraw.Rd
man/bpaeriskdiff.Rd
trastu/tracon.rds
trastu/tranothing.r
trastu/tranothing_byarmtype.rds
trastu/tranothing_byarmtypegrade.rds
trastu/tranothing_bystudytype.rds
trastu/trastu_meta_all1.png
trastu/trastu_meta_all2.png
trastu/trastuzumab.Rmd
vignettes/app1.Rmd
vignettes/app1.html
vignettes/app2_fns.R
vignettes/app2_plotarr.Rdata
vignettes/baseline.Rmd
vignettes/baseline.html
vignettes/bisph_app2_index.Rmd
vignettes/bisph_app2_index.html
vignettes/bisph_app2events/app2_event100_VAGINAL_BLEEDING.Rmd
vignettes/bisph_app2events/app2_event100_VAGINAL_BLEEDING.html
vignettes/bisph_app2events/app2_event101_VAGINAL_DISCHARGE.Rmd
vignettes/bisph_app2events/app2_event101_VAGINAL_DISCHARGE.html
vignettes/bisph_app2events/app2_event102_VOMITING.Rmd
vignettes/bisph_app2events/app2_event102_VOMITING.html
vignettes/bisph_app2events/app2_event10_ASTHENIA.Rmd
vignettes/bisph_app2events/app2_event10_ASTHENIA.html
vignettes/bisph_app2events/app2_event11_BACK_PAIN.Rmd
vignettes/bisph_app2events/app2_event11_BACK_PAIN.html
vignettes/bisph_app2events/app2_event12_BILIRUBIN.Rmd
vignettes/bisph_app2events/app2_event12_BILIRUBIN.html
vignettes/bisph_app2events/app2_event13_CARDIAC__CONGESTIVE_HEART_FAILURE.Rmd
vignettes/bisph_app2events/app2_event13_CARDIAC__CONGESTIVE_HEART_FAILURE.html
vignettes/bisph_app2events/app2_event14_CARDIAC_EVENTS.Rmd
vignettes/bisph_app2events/app2_event14_CARDIAC_EVENTS.html
vignettes/bisph_app2events/app2_event15_CATARACT.Rmd
vignettes/bisph_app2events/app2_event15_CATARACT.html
vignettes/bisph_app2events/app2_event16_CELLULITIS.Rmd
vignettes/bisph_app2events/app2_event16_CELLULITIS.html
vignettes/bisph_app2events/app2_event17_CHEST_PAIN.Rmd
vignettes/bisph_app2events/app2_event17_CHEST_PAIN.html
vignettes/bisph_app2events/app2_event18_CHILLS.Rmd
vignettes/bisph_app2events/app2_event18_CHILLS.html
vignettes/bisph_app2events/app2_event19_COLITIS.Rmd
vignettes/bisph_app2events/app2_event19_COLITIS.html
vignettes/bisph_app2events/app2_event1_ABDOMINAL_PAIN.Rmd
vignettes/bisph_app2events/app2_event1_ABDOMINAL_PAIN.html
vignettes/bisph_app2events/app2_event20_constipation.Rmd
vignettes/bisph_app2events/app2_event20_constipation.html
vignettes/bisph_app2events/app2_event21_COUGH.Rmd
vignettes/bisph_app2events/app2_event21_COUGH.html
vignettes/bisph_app2events/app2_event22_CPK_increased.Rmd
vignettes/bisph_app2events/app2_event22_CPK_increased.html
vignettes/bisph_app2events/app2_event23_DECREASED_APPETITE.Rmd
vignettes/bisph_app2events/app2_event23_DECREASED_APPETITE.html
vignettes/bisph_app2events/app2_event24_DEHYDRATION.Rmd
vignettes/bisph_app2events/app2_event24_DEHYDRATION.html
vignettes/bisph_app2events/app2_event25_DEPRESSION.Rmd
vignettes/bisph_app2events/app2_event25_DEPRESSION.html
vignettes/bisph_app2events/app2_event26_DIARRHOEA.Rmd
vignettes/bisph_app2events/app2_event26_DIARRHOEA.html
vignettes/bisph_app2events/app2_event27_DIZZINESS.Rmd
vignettes/bisph_app2events/app2_event27_DIZZINESS.html
vignettes/bisph_app2events/app2_event28_dry_mouth.Rmd
vignettes/bisph_app2events/app2_event28_dry_mouth.html
vignettes/bisph_app2events/app2_event29_DYSGEUSIA.Rmd
vignettes/bisph_app2events/app2_event29_DYSGEUSIA.html
vignettes/bisph_app2events/app2_event2_ALANINE_AMINOTRANSFERASE.Rmd
vignettes/bisph_app2events/app2_event2_ALANINE_AMINOTRANSFERASE.html
vignettes/bisph_app2events/app2_event30_DYSPEPSIA.Rmd
vignettes/bisph_app2events/app2_event30_DYSPEPSIA.html
vignettes/bisph_app2events/app2_event31_dysphagia.Rmd
vignettes/bisph_app2events/app2_event31_dysphagia.html
vignettes/bisph_app2events/app2_event32_DYSPNOEA.Rmd
vignettes/bisph_app2events/app2_event32_DYSPNOEA.html
vignettes/bisph_app2events/app2_event33_Elevated_creatinine.Rmd
vignettes/bisph_app2events/app2_event33_Elevated_creatinine.html
vignettes/bisph_app2events/app2_event34_endometrial_hyperplasia.Rmd
vignettes/bisph_app2events/app2_event34_endometrial_hyperplasia.html
vignettes/bisph_app2events/app2_event35_FATIGUE.Rmd
vignettes/bisph_app2events/app2_event35_FATIGUE.html
vignettes/bisph_app2events/app2_event36_FEBRILE_NEUTROPENIA.Rmd
vignettes/bisph_app2events/app2_event36_FEBRILE_NEUTROPENIA.html
vignettes/bisph_app2events/app2_event37_FEVER.Rmd
vignettes/bisph_app2events/app2_event37_FEVER.html
vignettes/bisph_app2events/app2_event38_GGT_increased.Rmd
vignettes/bisph_app2events/app2_event38_GGT_increased.html
vignettes/bisph_app2events/app2_event39_HAND-FOOT_SYNDROME.Rmd
vignettes/bisph_app2events/app2_event39_HAND-FOOT_SYNDROME.html
vignettes/bisph_app2events/app2_event3_ALKALINE_PHOSPHATASE.Rmd
vignettes/bisph_app2events/app2_event3_ALKALINE_PHOSPHATASE.html
vignettes/bisph_app2events/app2_event40_HEADACHE.Rmd
vignettes/bisph_app2events/app2_event40_HEADACHE.html
vignettes/bisph_app2events/app2_event41_HEPATOTOXICITY.Rmd
vignettes/bisph_app2events/app2_event41_HEPATOTOXICITY.html
vignettes/bisph_app2events/app2_event42_HOT_FLUSHES.Rmd
vignettes/bisph_app2events/app2_event42_HOT_FLUSHES.html
vignettes/bisph_app2events/app2_event43_HYPERGLYCAEMIA.Rmd
vignettes/bisph_app2events/app2_event43_HYPERGLYCAEMIA.html
vignettes/bisph_app2events/app2_event44_HYPERTENSION.Rmd
vignettes/bisph_app2events/app2_event44_HYPERTENSION.html
vignettes/bisph_app2events/app2_event45_hypertonia_muscle_spasms.Rmd
vignettes/bisph_app2events/app2_event45_hypertonia_muscle_spasms.html
vignettes/bisph_app2events/app2_event46_hypoalbuminemia.Rmd
vignettes/bisph_app2events/app2_event46_hypoalbuminemia.html
vignettes/bisph_app2events/app2_event47_HYPOCALCEMIA.Rmd
vignettes/bisph_app2events/app2_event47_HYPOCALCEMIA.html
vignettes/bisph_app2events/app2_event48_HYPOKALAEMIA.Rmd
vignettes/bisph_app2events/app2_event48_HYPOKALAEMIA.html
vignettes/bisph_app2events/app2_event49_hyponatremia.Rmd
vignettes/bisph_app2events/app2_event49_hyponatremia.html
vignettes/bisph_app2events/app2_event4_ALLERGIC_REACTIONS.Rmd
vignettes/bisph_app2events/app2_event4_ALLERGIC_REACTIONS.html
vignettes/bisph_app2events/app2_event50_Hypophosphatemia.Rmd
vignettes/bisph_app2events/app2_event50_Hypophosphatemia.html
vignettes/bisph_app2events/app2_event51_increased_bone_pain.Rmd
vignettes/bisph_app2events/app2_event51_increased_bone_pain.html
vignettes/bisph_app2events/app2_event52_INFECTION.Rmd
vignettes/bisph_app2events/app2_event52_INFECTION.html
vignettes/bisph_app2events/app2_event53_Influenza-like_symptoms.Rmd
vignettes/bisph_app2events/app2_event53_Influenza-like_symptoms.html
vignettes/bisph_app2events/app2_event54_INR_increased.Rmd
vignettes/bisph_app2events/app2_event54_INR_increased.html
vignettes/bisph_app2events/app2_event55_INSOMNIA.Rmd
vignettes/bisph_app2events/app2_event55_INSOMNIA.html
vignettes/bisph_app2events/app2_event56_IRREGULAR_MENSTRUATION.Rmd
vignettes/bisph_app2events/app2_event56_IRREGULAR_MENSTRUATION.html
vignettes/bisph_app2events/app2_event57_ISCHAEMIC_CARDIOVASCULAR_DISEASE.Rmd
vignettes/bisph_app2events/app2_event57_ISCHAEMIC_CARDIOVASCULAR_DISEASE.html
vignettes/bisph_app2events/app2_event58_ISCHAEMIC_CEREBROVASCULAR_EVENT.Rmd
vignettes/bisph_app2events/app2_event58_ISCHAEMIC_CEREBROVASCULAR_EVENT.html
vignettes/bisph_app2events/app2_event59_LEUCOCYTOPAENIA.Rmd
vignettes/bisph_app2events/app2_event59_LEUCOCYTOPAENIA.html
vignettes/bisph_app2events/app2_event5_ALOPECIA.Rmd
vignettes/bisph_app2events/app2_event5_ALOPECIA.html
vignettes/bisph_app2events/app2_event60_lipase_increased.Rmd
vignettes/bisph_app2events/app2_event60_lipase_increased.html
vignettes/bisph_app2events/app2_event61_LIVER_PROBLEMS.Rmd
vignettes/bisph_app2events/app2_event61_LIVER_PROBLEMS.html
vignettes/bisph_app2events/app2_event62_LOSS_OF_APPETITE.Rmd
vignettes/bisph_app2events/app2_event62_LOSS_OF_APPETITE.html
vignettes/bisph_app2events/app2_event63_LYMPHOEDEMA.Rmd
vignettes/bisph_app2events/app2_event63_LYMPHOEDEMA.html
vignettes/bisph_app2events/app2_event64_LYMPHOPAENIA.Rmd
vignettes/bisph_app2events/app2_event64_LYMPHOPAENIA.html
vignettes/bisph_app2events/app2_event65_menometrorrhagia.Rmd
vignettes/bisph_app2events/app2_event65_menometrorrhagia.html
vignettes/bisph_app2events/app2_event66_MOOD_DISTRUBANCES.Rmd
vignettes/bisph_app2events/app2_event66_MOOD_DISTRUBANCES.html
vignettes/bisph_app2events/app2_event67_MOTOR_NEUROPATHY.Rmd
vignettes/bisph_app2events/app2_event67_MOTOR_NEUROPATHY.html
vignettes/bisph_app2events/app2_event68_MUCOSITIS.Rmd
vignettes/bisph_app2events/app2_event68_MUCOSITIS.html
vignettes/bisph_app2events/app2_event69_MUSCULOSKELETAL_PAIN_EVENT.Rmd
vignettes/bisph_app2events/app2_event69_MUSCULOSKELETAL_PAIN_EVENT.html
vignettes/bisph_app2events/app2_event6_ANAEMIA.Rmd
vignettes/bisph_app2events/app2_event6_ANAEMIA.html
vignettes/bisph_app2events/app2_event70_MYALGIA.Rmd
vignettes/bisph_app2events/app2_event70_MYALGIA.html
vignettes/bisph_app2events/app2_event71_Nasopharyngitis.Rmd
vignettes/bisph_app2events/app2_event71_Nasopharyngitis.html
vignettes/bisph_app2events/app2_event72_NAUSEA.Rmd
vignettes/bisph_app2events/app2_event72_NAUSEA.html
vignettes/bisph_app2events/app2_event73_neuralgia.Rmd
vignettes/bisph_app2events/app2_event73_neuralgia.html
vignettes/bisph_app2events/app2_event74_NEUROSENSORY_PROBLEMS.Rmd
vignettes/bisph_app2events/app2_event74_NEUROSENSORY_PROBLEMS.html
vignettes/bisph_app2events/app2_event75_NEUTROPENIA.Rmd
vignettes/bisph_app2events/app2_event75_NEUTROPENIA.html
vignettes/bisph_app2events/app2_event76_neutrophil_count_decreased.Rmd
vignettes/bisph_app2events/app2_event76_neutrophil_count_decreased.html
vignettes/bisph_app2events/app2_event77_OEDEMA.Rmd
vignettes/bisph_app2events/app2_event77_OEDEMA.html
vignettes/bisph_app2events/app2_event78_oesophagitis.Rmd
vignettes/bisph_app2events/app2_event78_oesophagitis.html
vignettes/bisph_app2events/app2_event79_ORAL_MUCOSITIS.Rmd
vignettes/bisph_app2events/app2_event79_ORAL_MUCOSITIS.html
vignettes/bisph_app2events/app2_event7_ARTHRALGIA.Rmd
vignettes/bisph_app2events/app2_event7_ARTHRALGIA.html
vignettes/bisph_app2events/app2_event80_OsteoNecrosis_of_the_Jaw.Rmd
vignettes/bisph_app2events/app2_event80_OsteoNecrosis_of_the_Jaw.html
vignettes/bisph_app2events/app2_event81_OTHER_EYE_DISORDERS.Rmd
vignettes/bisph_app2events/app2_event81_OTHER_EYE_DISORDERS.html
vignettes/bisph_app2events/app2_event82_pain_in_extremity.Rmd
vignettes/bisph_app2events/app2_event82_pain_in_extremity.html
vignettes/bisph_app2events/app2_event83_PANCREATITIS.Rmd
vignettes/bisph_app2events/app2_event83_PANCREATITIS.html
vignettes/bisph_app2events/app2_event84_PARAESTHESIA.Rmd
vignettes/bisph_app2events/app2_event84_PARAESTHESIA.html
vignettes/bisph_app2events/app2_event85_periodontal_disease.Rmd
vignettes/bisph_app2events/app2_event85_periodontal_disease.html
vignettes/bisph_app2events/app2_event86_phlebitis.Rmd
vignettes/bisph_app2events/app2_event86_phlebitis.html
vignettes/bisph_app2events/app2_event87_PNEUMONIA.Rmd
vignettes/bisph_app2events/app2_event87_PNEUMONIA.html
vignettes/bisph_app2events/app2_event88_PULMONARY_EMBOLUS.Rmd
vignettes/bisph_app2events/app2_event88_PULMONARY_EMBOLUS.html
vignettes/bisph_app2events/app2_event89_renal_impairment.Rmd
vignettes/bisph_app2events/app2_event89_renal_impairment.html
vignettes/bisph_app2events/app2_event8_arthropathy_arthritis.Rmd
vignettes/bisph_app2events/app2_event8_arthropathy_arthritis.html
vignettes/bisph_app2events/app2_event90_SKIN_DISORDER.Rmd
vignettes/bisph_app2events/app2_event90_SKIN_DISORDER.html
vignettes/bisph_app2events/app2_event91_stiffness.Rmd
vignettes/bisph_app2events/app2_event91_stiffness.html
vignettes/bisph_app2events/app2_event92_STOMATITIS.Rmd
vignettes/bisph_app2events/app2_event92_STOMATITIS.html
vignettes/bisph_app2events/app2_event93_SYNCOPE.Rmd
vignettes/bisph_app2events/app2_event93_SYNCOPE.html
vignettes/bisph_app2events/app2_event94_THROMBOEMBOLIC_EVENTS.Rmd
vignettes/bisph_app2events/app2_event94_THROMBOEMBOLIC_EVENTS.html
vignettes/bisph_app2events/app2_event95_THROMBOPAENIA.Rmd
vignettes/bisph_app2events/app2_event95_THROMBOPAENIA.html
vignettes/bisph_app2events/app2_event96_THYROID_CANCER.Rmd
vignettes/bisph_app2events/app2_event96_THYROID_CANCER.html
vignettes/bisph_app2events/app2_event97_TRAUMATIC_FRACTURES.Rmd
vignettes/bisph_app2events/app2_event97_TRAUMATIC_FRACTURES.html
vignettes/bisph_app2events/app2_event98_uterine_dilation_curettage.Rmd
vignettes/bisph_app2events/app2_event98_uterine_dilation_curettage.html
vignettes/bisph_app2events/app2_event99_uterine_polyp.Rmd
vignettes/bisph_app2events/app2_event99_uterine_polyp.html
vignettes/bisph_app2events/app2_event9_ASPARTATE_AMINOTRANSFERASE.Rmd
vignettes/bisph_app2events/app2_event9_ASPARTATE_AMINOTRANSFERASE.html
vignettes/direct.emf
vignettes/direct.png
vignettes/direct_general.Rmd
vignettes/direct_general.html
vignettes/figure2.tif
vignettes/figure2blue.tif
vignettes/generate_appendix.r
vignettes/healthy.Rmd
vignettes/healthy.html
vignettes/metareg.Rmd
vignettes/metareg.html
vignettes/nmacall.R
vignettes/nmageneral.Rmd
vignettes/nmaresults.R
vignettes/plot.Rmd
vignettes/results.Rmd
vignettes/results.html
