Multi-State Markov and Hidden Markov Models in Continuous Time

2phase | Coxian phase-type distribution with two phases |

aneur | Aortic aneurysm progression data |

boot.msm | Bootstrap resampling for multi-state models |

bos | Bronchiolitis obliterans syndrome after lung transplants |

cav | Heart transplant monitoring data |

cmodel.object | Developer documentation: censoring model object |

coef.msm | Extract model coefficients |

crudeinits.msm | Calculate crude initial values for transition intensities |

deltamethod | The delta method |

draic.msm | Criteria for comparing two multi-state models with nested... |

ecmodel.object | Developer documentation: model for covariates on... |

efpt.msm | Expected first passage time |

ematrix.msm | Misclassification probability matrix |

emodel.object | Developer documentation: misclassification model structure... |

fev | FEV1 measurements from lung transplant recipients |

hazard.msm | Calculate tables of hazard ratios for covariates on... |

hmm-dists | Hidden Markov model constructors |

hmmMV | Multivariate hidden Markov models |

hmodel.object | Developer documentation: hidden Markov model structure object |

logLik.msm | Extract model log-likelihood |

lrtest.msm | Likelihood ratio test |

MatrixExp | Matrix exponential |

medists | Measurement error distributions |

model.frame.msm | Extract original data from 'msm' objects. |

msm | Multi-state Markov and hidden Markov models in continuous... |

msm2Surv | Convert data for 'msm' to data for 'survival', 'mstate' or... |

msm.form.qoutput | Extract msm model parameter estimates in compact format |

msm.object | Fitted msm model objects |

odds.msm | Calculate tables of odds ratios for covariates on... |

paramdata.object | Developer documentation: internal msm parameters object |

pearson.msm | Pearson-type goodness-of-fit test |

pexp | Exponential distribution with piecewise-constant rate |

phasemeans.msm | Parameters of phase-type models in mixture form |

plot.msm | Plots of multi-state models |

plot.prevalence.msm | Plot of observed and expected prevalences |

plotprog.msm | Kaplan Meier estimates of incidence |

plot.survfit.msm | Plot empirical and fitted survival curves |

pmatrix.msm | Transition probability matrix |

pmatrix.piecewise.msm | Transition probability matrix for processes with... |

pnext.msm | Probability of each state being next |

ppass.msm | Passage probabilities |

prevalence.msm | Tables of observed and expected prevalences |

print.msm | Print a fitted msm model object |

printold.msm | Print a fitted msm model object |

psor | Psoriatic arthritis data |

qcmodel.object | Developer documentation: model for covariates on transition... |

qgeneric | Generic function to find quantiles of a distribution |

qmatrix.msm | Transition intensity matrix |

qmodel.object | Developer documentation: transition model structure object |

qratio.msm | Estimated ratio of transition intensities |

recreate.olddata | Convert data stored in msm object to old format |

scoreresid.msm | Score residuals |

simfitted.msm | Simulate from a Markov model fitted using msm |

sim.msm | Simulate one individual trajectory from a continuous-time... |

simmulti.msm | Simulate multiple trajectories from a multi-state Markov... |

sojourn.msm | Mean sojourn times from a multi-state model |

statetable.msm | Table of transitions |

summary.msm | Summarise a fitted multi-state model |

surface.msm | Explore the likelihood surface |

tnorm | Truncated Normal distribution |

totlos.msm | Total length of stay, or expected number of visits |

transient.msm | Transient and absorbing states |

updatepars.msm | updatepars.msm |

viterbi.msm | Calculate the probabilities of underlying states and the most... |

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