impute.missing: Fill in missing values in aSnpMatrix object

In chr1swallace/annotSnpStats: Annotated SnpMatrix objects

Fill in missing values in aSnpMatrix object

Description

Uses snpStats' snp.imputation function

Usage

impute.missing(X, bp = 1:ncol(X), strata = NULL, numeric = FALSE, ...)

Arguments

X	SnpMatrix or aSnpMatrix object
bp	optional vector giving bp of SNPs, of length == number of SNPs
strata	optional strata vector for imputation within strata, length == number of samples
numeric	flag determining class of return value, default FALSE
...	additional parameters passed to snpStats::impute.snps

Value

matrix, either numeric (if numeric=TRUE) or SnpMatrix (if numeric=FALSE)

Author(s)

Chris Wallace

chr1swallace/annotSnpStats documentation built on April 18, 2023, 11:22 a.m.