snpStatsWriter-package: snpStatsWriter
In chr1swallace/snpStatsWriter: Flexible Writing of snpStats Objects to Flat Files

Description Details Author(s) References See Also Examples

Write snpMatrix objects to file in other formats.

Package:	snpStatsWriter
Type:	Package
Version:	1.0
Date:	2012-10-29
License:	GPL
LazyLoad:	yes

Maintainer: Chris Wallace <chris.wallace@cimr.cam.ac.uk>

David Clayton and Hin-Tak Leung (2007). An R package for analysis of whole-genome association studies. Hum Hered 64:45-51.

snpStats

data(testdata,package="snpStats")
A.small <- Autosomes[1:6,1:10]
f <- tempfile()
## write in suitable format for snphap
nsnps <- ncol(A.small)
write.simple(A.small, a1=rep("1",nsnps), a2=rep("2",nsnps), gsep=" ",
             nullallele='0', file=f,
                write.sampleid=FALSE)
unlink(f)