snpStatsWriter: Flexible Writing of snpStats Objects to Flat Files

Description Usage Arguments Value Author(s) Examples

see write.simple for general information

1 2	write.phase(X, a1 = rep(1, ncol(X)), a2 = rep(2, ncol(X)), bp = NULL, file)

`X`	SnpMatrix object
`a1`	vector of first allele at each SNP
`a2`	vector of second allele at each SNP
`bp`	vector of base pair positions for each SNP
`file`	Output file name.

No return value, but has the side effect of writing specified output files.

Chris Wallace

data(testdata,package="snpStats")
A.small <- Autosomes[1:6,1:10]
f <- tempfile()

## write in suitable format for PHASE
nsnps <- ncol(A.small)
write.phase(A.small, file=f)
unlink(f)