chris-mcginnis-ucsf/MULTI-seq: deMULTIplex is a software suite for MULTI-seq sample barcode FASTQ pre-processing and cell barcode classification.

'deMULTIplex' is an R package for analyzing single-cell RNA sequencing data generated with the MULTI-seq sample multiplexing method. Package includes software to (1) Convert raw MULTI-seq sample barcode library FASTQs into a sample barcode UMI count matrix, and (2) Classify cell barcodes into sample barcode groups. For more information, see our pre-print: https://www.biorxiv.org/content/10.1101/387241v1.

install.packages("remotes")
remotes::install_github("chris-mcginnis-ucsf/MULTI-seq")