| addCsvToMetadataLoad | Merge Main. Call the individual steps of merge for each file. |
| askHowMany | Ask if user wants to load one file or a directory with... |
| bagit | Since we don't have a way of getting the bagit module in R,... |
| browseDialog | Open a file browsing gui to let the user pick a location |
| checkVersion | Check the version number from metadata |
| cleanCsv | Replace all blank values in csv matrices |
| collectCsvs | Collect csvs main. Collect and remove csv "values" fields. |
| collectCsvSection | Collect and remove csv from one section: Paleo or chron... |
| colsToList | Convert column type: data frame to list Function may be... |
| confirmLipdVersion | Check for a LiPD version in the metadata. Create one if it... |
| convertDfsLst | Check / convert and fixed data frames into scalable lists |
| convertSM | Convert from a single fixed table, to a multiple scalable... |
| convertVersion | Convert LiPD version structure whenever necessary |
| createRange | Create the range for ensemble table "number" field |
| createTmpDir | Create a temporary working directory |
| getDataLoad | Retrieve and import csv and jsonld files in the current... |
| getDatasetName | Get data set name from metadata |
| getListLpdExt | #' Import each of the required modules for the package #'... |
| getSrcOrDst | Ask user where local file/folder location is. |
| hasData | Check if metadata path exists. Combine path and i to check... |
| indexByNameLoad | Change index-by-number to index-by-variableName |
| indexByNumberSave | Main indexing. Convert all index-by-name to index-by-number. |
| indexGeo | Make geo semi-flat. Remove unnecessary levels between us and... |
| indexSectionLoad | Change index-by-number for one section |
| indexSectionSave | Index a single section. Paleo or Chron |
| isNullOb | Checks if an object is null/empty |
| listFiles | Get list of csv files in current directory and below |
| loadLipdFile | Import the data from each csv and jsonld file for given LiPD |
| loadLipds | Main LiPD loading function. Combines all processes into one. |
| mergeCsvLoad | Merge CSV data into the metadata |
| mergeDataLoad | Merge csv numeric data into the metadata columns |
| moveColsDownSave | Remove column names indexing. Set them to index by their... |
| moveColsUp | Get rid of "columns" layer so that the columns data is... |
| moveTableUpSave | Unindex tables by name. Move to index by number. |
| multiLoad | Loop over multiple LiPD files. Load one at a time. |
| multiSave | Parse library of data records |
| parseTable | Parse the csv value columns from the table, then split the... |
| promptStringSave | Prompt the user for some string entry |
| removeEmptyRec | Remove all NA, NULL, and empty objects from the data... |
| removeLayers | Remove CSV and metadata layer from LiPD file. Also, remove... |
| returnToRoot | Return to preset "home" working directory |
| saveLipdFile | Main function. Run all save sub-routines for one LiPD record |
| saveLipds | Main function. Loop through all LiPD records, saving, and... |
| setVersion | Set the LiPD version field |
| singleLoad | Load one LiPD file. All steps |
| singleSave | Parse one data record |
| stripExtension | Remove the file extension from string name |
| swapGeoCoordinates | An old bug caused some geo coordinates to be reversed. This... |
| tableToList | Convert table type: data frame to list |
| unindexGeo | Convert geo from semi-flat structure back to original GeoJSON... |
| unzipper | Unzip LiPD file to the temporary directory |
| verifyOutputFilename | Check if output filename has invalid filename characters.... |
| writeCsvs | Write out each CSV file for this LiPD record csv.data format:... |
| zipper | Zip a directory, and move up a level |
