analysis.funcs: Analysis functions for skeleSim parameter objects

In christianparobek/skeleSim: Genetic Simulation Engine

Description

Run Global, Locus, and Pairwise analyses on results from a single simulation replicate stored in [e-mail]#'

Usage

analysisFunc(params)

loadResultsMatrix(params, mat, label)

formatOverallStats(g, num.perm.reps)

globalAnalysis(g, num.perm.reps)

locusAnalysisGenotypes(g)

hapSmryFunc(g)

locusAnalysisHaplotypes(g)

calcChordDist(dat)

pairwiseAnalysis(g, num.perm.reps)

Arguments

params	a skeleSim.params object.
mat	results matrix to be loaded into params object.
label	analysis type label ("Global", "Locus", or "Pairwise").
g	a gtypes object.
num.perm.reps	number of permutation replicates.
dat	data.frame in hierfstat format (see genet.dist).

christianparobek/skeleSim documentation built on Feb. 29, 2020, 6:58 p.m.