README.md

In christopherkenny/dependencycheckR: Debug R Dependencies for Remote Machine

dependencycheckR

Mostly empty package for debugging depency loading on remote machines Issue as follows:

Started by user r-hub Jenkins admin Building remotely on solaris-f13431b6 (swarm solaris) in workspace /users/rhub/solarischeck/workspace/dependencycheckR_0.0.0.9000.tar.gz-090bc1453e3b4bbd9edba2a2372d722e [dependencycheckR_0.0.0.9000.tar.gz-090bc1453e3b4bbd9edba2a2372d722e] $ /bin/bash /var/tmp/hudson4527010205909913017.sh % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0 100 15 0 15 0 0 13 0 --:--:-- 0:00:01 --:--:-- 13 {"status":"ok"}>>>>>============== Creating user X5SHRqC

============== Downloading package % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1458 100 1458 0 0 16382 0 --:--:-- --:--:-- --:--:-- 16382

============== Setting up home directory Querying R version ============== Running check Oracle Corporation SunOS 5.10 Generic Patch January 2005 Setting up R environment install.packages('BiocManager') Installing package into ‘/export/home/X5SHRqC/R’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/BiocManager_1.30.10.tar.gz' Content type 'application/x-gzip' length 40205 bytes (39 KB) ================================================== downloaded 39 KB

• installing source package ‘BiocManager’ ... package ‘BiocManager’ successfully unpacked and MD5 sums checked using staged installation R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• DONE (BiocManager)

The downloaded source packages are in ‘/export/home/X5SHRqC/Rtemp/Rtmpza5UJ2/downloaded_packages’

Setting up Xvfb

============== Installing package dependencies

Fatal server error: Could not create server lock file: /tmp/.X87-lock

source("https://install-github.me/r-lib/remotes@r-hub") The install-github.me service is deprecated, please stop using it. Downloading GitHub repo r-lib/remotes@r-hub Running R CMD build... checking for file ‘/export/home/X5SHRqC/Rtemp/RtmpbzhaO9/remotes70b3760408a/r-lib-remotes-6e26f33/DESCRIPTION’ ... OK preparing ‘remotes’: checking DESCRIPTION meta-information ... OK checking for LF line-endings in source and make files and shell scripts checking for empty or unneeded directories building ‘remotes_2.1.1.9000.tar.gz’ Installing package into ‘/export/home/X5SHRqC/R’ (as ‘lib’ is unspecified) installing source package ‘remotes’ ... using staged installation R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path DONE (remotes)

remotes::install_local('dependencycheckR_0.0.0.9000.tar.gz', dependencies = TRUE, INSTALL_opts = '--build') Rcpp (NA -> 1.0.5 ) [CRAN] classInt (NA -> 0.4-3 ) [CRAN] DBI (NA -> 1.1.0 ) [CRAN] magrittr (NA -> 1.5 ) [CRAN] units (NA -> 0.6-7 ) [CRAN] e1071 (NA -> 1.7-3 ) [CRAN] sp (NA -> 1.4-2 ) [CRAN] raster (NA -> 3.3-13 ) [CRAN] gdata (NA -> 2.18.0 ) [CRAN] gtools (NA -> 3.8.2 ) [CRAN] sf (NA -> 0.9-5 ) [CRAN] spData (NA -> 0.3.8 ) [CRAN] deldir (NA -> 0.1-28 ) [CRAN] LearnBayes (NA -> 2.15.1 ) [CRAN] coda (NA -> 0.19-3 ) [CRAN] expm (NA -> 0.999-5) [CRAN] gmodels (NA -> 2.18.1 ) [CRAN] lwgeom (NA -> 0.2-5 ) [CRAN] spdep (NA -> 1.1-5 ) [CRAN] Installing 19 packages: Rcpp, classInt, DBI, magrittr, units, e1071, sp, raster, gdata, gtools, sf, spData, deldir, LearnBayes, coda, expm, gmodels, lwgeom, spdep Installing packages into ‘/export/home/X5SHRqC/R’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.5.tar.gz' Content type 'application/x-gzip' length 2950521 bytes (2.8 MB) ================================================== downloaded 2.8 MB

trying URL 'https://cloud.r-project.org/src/contrib/classInt_0.4-3.tar.gz' Content type 'application/x-gzip' length 403884 bytes (394 KB) ================================================== downloaded 394 KB

trying URL 'https://cloud.r-project.org/src/contrib/DBI_1.1.0.tar.gz' Content type 'application/x-gzip' length 633079 bytes (618 KB) ================================================== downloaded 618 KB

trying URL 'https://cloud.r-project.org/src/contrib/magrittr_1.5.tar.gz' Content type 'application/x-gzip' length 200504 bytes (195 KB) ================================================== downloaded 195 KB

trying URL 'https://cloud.r-project.org/src/contrib/units_0.6-7.tar.gz' Content type 'application/x-gzip' length 957214 bytes (934 KB) ================================================== downloaded 934 KB

trying URL 'https://cloud.r-project.org/src/contrib/e1071_1.7-3.tar.gz' Content type 'application/x-gzip' length 582517 bytes (568 KB) ================================================== downloaded 568 KB

trying URL 'https://cloud.r-project.org/src/contrib/sp_1.4-2.tar.gz' Content type 'application/x-gzip' length 1135318 bytes (1.1 MB) ================================================== downloaded 1.1 MB

trying URL 'https://cloud.r-project.org/src/contrib/raster_3.3-13.tar.gz' Content type 'application/x-gzip' length 574517 bytes (561 KB) ================================================== downloaded 561 KB

trying URL 'https://cloud.r-project.org/src/contrib/gdata_2.18.0.tar.gz' Content type 'application/x-gzip' length 1058430 bytes (1.0 MB) ================================================== downloaded 1.0 MB

trying URL 'https://cloud.r-project.org/src/contrib/gtools_3.8.2.tar.gz' Content type 'application/x-gzip' length 197529 bytes (192 KB) ================================================== downloaded 192 KB

trying URL 'https://cloud.r-project.org/src/contrib/sf_0.9-5.tar.gz' Content type 'application/x-gzip' length 9001885 bytes (8.6 MB) ================================================== downloaded 8.6 MB

trying URL 'https://cloud.r-project.org/src/contrib/spData_0.3.8.tar.gz' Content type 'application/x-gzip' length 3819066 bytes (3.6 MB) ================================================== downloaded 3.6 MB

trying URL 'https://cloud.r-project.org/src/contrib/deldir_0.1-28.tar.gz' Content type 'application/x-gzip' length 105886 bytes (103 KB) ================================================== downloaded 103 KB

trying URL 'https://cloud.r-project.org/src/contrib/LearnBayes_2.15.1.tar.gz' Content type 'application/x-gzip' length 794622 bytes (775 KB) ================================================== downloaded 775 KB

trying URL 'https://cloud.r-project.org/src/contrib/coda_0.19-3.tar.gz' Content type 'application/x-gzip' length 73555 bytes (71 KB) ================================================== downloaded 71 KB

trying URL 'https://cloud.r-project.org/src/contrib/expm_0.999-5.tar.gz' Content type 'application/x-gzip' length 136730 bytes (133 KB) ================================================== downloaded 133 KB

trying URL 'https://cloud.r-project.org/src/contrib/gmodels_2.18.1.tar.gz' Content type 'application/x-gzip' length 33783 bytes (32 KB) ================================================== downloaded 32 KB

trying URL 'https://cloud.r-project.org/src/contrib/lwgeom_0.2-5.tar.gz' Content type 'application/x-gzip' length 501653 bytes (489 KB) ================================================== downloaded 489 KB

trying URL 'https://cloud.r-project.org/src/contrib/spdep_1.1-5.tar.gz' Content type 'application/x-gzip' length 2867051 bytes (2.7 MB) ================================================== downloaded 2.7 MB

• installing source package ‘Rcpp’ ... package ‘Rcpp’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I../inst/include/ -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c api.cpp -o api.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I../inst/include/ -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c attributes.cpp -o attributes.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I../inst/include/ -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c barrier.cpp -o barrier.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I../inst/include/ -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c date.cpp -o date.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I../inst/include/ -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c module.cpp -o module.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I../inst/include/ -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c rcpp_init.cpp -o rcpp_init.o /opt/csw/bin/g++-5.5 -std=gnu++11 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o installing to /export/home/X5SHRqC/R/00LOCK-Rcpp/00new/Rcpp/libs R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘Rcpp’ as ‘Rcpp_1.0.5_R_i386-pc-solaris2.10.tar.gz’
• DONE (Rcpp)
• installing source package ‘DBI’ ... package ‘DBI’ successfully unpacked and MD5 sums checked using staged installation R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘DBI’ as ‘DBI_1.1.0_R_i386-pc-solaris2.10.tar.gz’
• DONE (DBI)
• installing source package ‘magrittr’ ... package ‘magrittr’ successfully unpacked and MD5 sums checked using staged installation R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘magrittr’ as ‘magrittr_1.5_R_i386-pc-solaris2.10.tar.gz’
• DONE (magrittr)
• installing source package ‘e1071’ ... package ‘e1071’ successfully unpacked and MD5 sums checked using staged installation checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /opt/csw/bin/g++-5.5 -std=gnu++11 accepts -g... yes libs /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c Rsvm.c -o Rsvm.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c cmeans.c -o cmeans.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c cshell.c -o cshell.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c floyd.c -o floyd.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c init.c -o init.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c svm.cpp -o svm.o /opt/csw/bin/g++-5.5 -std=gnu++11 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o e1071.so Rsvm.o cmeans.o cshell.o floyd.o init.o svm.o installing to /export/home/X5SHRqC/R/00LOCK-e1071/00new/e1071/libs R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘e1071’ as ‘e1071_1.7-3_R_i386-pc-solaris2.10.tar.gz’
• DONE (e1071)
• installing source package ‘sp’ ... package ‘sp’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c Rcentroid.c -o Rcentroid.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c gcdist.c -o gcdist.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c init.c -o init.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c pip.c -o pip.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c pip2.c -o pip2.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c sp_xports.c -o sp_xports.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c surfaceArea.c -o surfaceArea.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c zerodist.c -o zerodist.o /opt/csw/bin/gcc-5.5 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o installing to /export/home/X5SHRqC/R/00LOCK-sp/00new/sp/libs R data demo inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘sp’ as ‘sp_1.4-2_R_i386-pc-solaris2.10.tar.gz’
• DONE (sp)
• installing source package ‘gtools’ ... package ‘gtools’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c gtools_load.c -o gtools_load.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c roman2int.c -o roman2int.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c setTCPNoDelay.c -o setTCPNoDelay.o /opt/csw/bin/gcc-5.5 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o gtools.so gtools_load.o roman2int.o setTCPNoDelay.o installing to /export/home/X5SHRqC/R/00LOCK-gtools/00new/gtools/libs R data inst byte-compile and prepare package for lazy loading help installing help indices * building package indices testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘gtools’ as ‘gtools_3.8.2_R_i386-pc-solaris2.10.tar.gz’
• DONE (gtools)
• installing source package ‘deldir’ ... package ‘deldir’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c acchk.f -o acchk.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c addpt.f -o addpt.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c adjchk.f -o adjchk.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c binsrt.f -o binsrt.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c circen.f -o circen.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c cross.f -o cross.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c crossutil.f -o crossutil.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c delet.f -o delet.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c delet1.f -o delet1.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c delout.f -o delout.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c delseg.f -o delseg.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c dirout.f -o dirout.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c dirseg.f -o dirseg.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c dldins.f -o dldins.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c init.c -o init.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c initad.f -o initad.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c insrt.f -o insrt.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c insrt1.f -o insrt1.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c intri.f -o intri.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c locn.f -o locn.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c master.f -o master.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c mnnd.f -o mnnd.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c pred.f -o pred.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c qtest.f -o qtest.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c qtest1.f -o qtest1.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c stoke.f -o stoke.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c succ.f -o succ.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c swap.f -o swap.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c testeq.f -o testeq.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c triar.f -o triar.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c trifnd.f -o trifnd.o /opt/csw/bin/gcc-5.5 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o deldir.so acchk.o addpt.o adjchk.o binsrt.o circen.o cross.o crossutil.o delet.o delet1.o delout.o delseg.o dirout.o dirseg.o dldins.o init.o initad.o insrt.o insrt1.o intri.o locn.o master.o mnnd.o pred.o qtest.o qtest1.o stoke.o succ.o swap.o testeq.o triar.o trifnd.o -lgfortran -lm -lquadmath -R/opt/csw/lib installing to /export/home/X5SHRqC/R/00LOCK-deldir/00new/deldir/libs R data moving datasets to lazyload DB * inst byte-compile and prepare package for lazy loading help installing help indices * building package indices testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘deldir’ as ‘deldir_0.1-28_R_i386-pc-solaris2.10.tar.gz’
• DONE (deldir)
• installing source package ‘LearnBayes’ ... package ‘LearnBayes’ successfully unpacked and MD5 sums checked using staged installation R data moving datasets to lazyload DB * demo inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘LearnBayes’ as ‘LearnBayes_2.15.1_R_i386-pc-solaris2.10.tar.gz’
• DONE (LearnBayes)
• installing source package ‘coda’ ... package ‘coda’ successfully unpacked and MD5 sums checked using staged installation R data inst byte-compile and prepare package for lazy loading help installing help indices * building package indices testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘coda’ as ‘coda_0.19-3_R_i386-pc-solaris2.10.tar.gz’
• DONE (coda)
• installing source package ‘expm’ ... package ‘expm’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c R_dgebal.c -o R_dgebal.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c expm-eigen.c -o expm-eigen.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c expm.c -o expm.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c init.c -o init.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c logm-eigen.c -o logm-eigen.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c matexp.f -o matexp.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c matexp_MH09.c -o matexp_MH09.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c matpow.c -o matpow.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c matrexp.f -o matrexp.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c matrexpO.f -o matrexpO.o /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c mexp-common.f -o mexp-common.o /opt/csw/bin/gcc-5.5 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o expm.so R_dgebal.o expm-eigen.o expm.o init.o logm-eigen.o matexp.o matexp_MH09.o matpow.o matrexp.o matrexpO.o mexp-common.o -L/opt/csw/lib/R/lib -lRlapack -L/opt/csw/lib/R/lib -lRblas -lgfortran -lm -lquadmath -R/opt/csw/lib -lgfortran -lm -lquadmath -R/opt/csw/lib installing to /export/home/X5SHRqC/R/00LOCK-expm/00new/expm/libs R data demo inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘expm’ as ‘expm_0.999-5_R_i386-pc-solaris2.10.tar.gz’
• DONE (expm)
• installing source package ‘classInt’ ... package ‘classInt’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/gfortran-5.5 -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c fish1.f -o fish1.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c init.c -o init.o /opt/csw/bin/gcc-5.5 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o classInt.so fish1.o init.o -lgfortran -lm -lquadmath -R/opt/csw/lib installing to /export/home/X5SHRqC/R/00LOCK-classInt/00new/classInt/libs R inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
• creating tarball packaged installation of ‘classInt’ as ‘classInt_0.4-3_R_i386-pc-solaris2.10.tar.gz’
• DONE (classInt)
• installing source package ‘units’ ... package ‘units’ successfully unpacked and MD5 sums checked using staged installation configure: units: 0.6-7 checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /opt/csw/bin/g++-5.5 -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... /opt/csw/bin/g++-5.5 -std=gnu++11 -E checking for grep that handles long lines and -e... /opt/csw/bin/ggrep checking for egrep... /opt/csw/bin/ggrep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for error_at_line... no checking for gcc... /opt/csw/bin/gcc-5.5 checking whether we are using the GNU C compiler... yes checking whether /opt/csw/bin/gcc-5.5 accepts -g... yes checking for /opt/csw/bin/gcc-5.5 option to accept ISO C89... none needed checking for XML_ParserCreate in -lexpat... yes checking udunits2.h usability... no checking udunits2.h presence... no checking for udunits2.h... no checking udunits2/udunits2.h usability... no checking udunits2/udunits2.h presence... no checking for udunits2/udunits2.h... no checking for ut_read_xml in -ludunits2... no configure: error: in `/export/home/X5SHRqC/Rtemp/Rtmpz3KSgC/R.INSTALLd7b5c176234/units': configure: error: Configuration failed because libudunits2.so was not found. Try installing:
  • deb: libudunits2-dev (Debian, Ubuntu, ...)
  • rpm: udunits2-devel (Fedora, EPEL, ...)
  • brew: udunits (OSX) If udunits2 is already installed in a non-standard location, use: --configure-args='--with-udunits2-lib=/usr/local/lib' if the library was not found, and/or: --configure-args='--with-udunits2-include=/usr/include/udunits2' if the header was not found, replacing paths with appropriate values. You can alternatively set UDUNITS2_INCLUDE and UDUNITS2_LIBS manually.

See `config.log' for more details ERROR: configuration failed for package ‘units’ removing ‘/export/home/X5SHRqC/R/units’ installing source package ‘raster’ ... package ‘raster’ successfully unpacked and MD5 sums checked using staged installation libs /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c RasterModule.cpp -o RasterModule.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c RcppExports.cpp -o RcppExports.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c aggregate.cpp -o aggregate.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c area.cpp -o area.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c bilinear.cpp -o bilinear.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c broom.cpp -o broom.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c cellRowCol.cpp -o cellRowCol.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c clamp.cpp -o clamp.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c distance.cpp -o distance.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c edge.cpp -o edge.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c focal_fun.cpp -o focal_fun.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c focal_get.cpp -o focal_get.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c focal_sum.cpp -o focal_sum.o /opt/csw/bin/gcc-5.5 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c geodesic.c -o geodesic.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c getPolygons.cpp -o getPolygons.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c layerize.cpp -o layerize.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c memory.cpp -o memory.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c modal.cpp -o modal.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c ppmin.cpp -o ppmin.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c raster_aggregate.cpp -o raster_aggregate.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c raster_distance.cpp -o raster_distance.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c rasterize.cpp -o rasterize.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c reclass.cpp -o reclass.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c terrain.cpp -o terrain.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c util.cpp -o util.o /opt/csw/bin/g++-5.5 -std=gnu++11 -I"/opt/csw/lib/R/include" -DNDEBUG -I'/export/home/X5SHRqC/R/Rcpp/include' -I/opt/csw/include -fPIC -O2 -pipe -fno-omit-frame-pointer -m32 -march=pentiumpro -c xyCell.cpp -o xyCell.o /opt/csw/bin/g++-5.5 -std=gnu++11 -shared -m32 -march=pentiumpro -L/opt/csw/lib -o raster.so RasterModule.o RcppExports.o aggregate.o area.o bilinear.o broom.o cellRowCol.o clamp.o distance.o edge.o focal_fun.o focal_get.o focal_sum.o geodesic.o getPolygons.o layerize.o memory.o modal.o ppmin.o raster_aggregate.o raster_distance.o rasterize.o reclass.o terrain.o util.o xyCell.o installing to /export/home/X5SHRqC/R/00LOCK-raster/00new/raster/libs R inst byte-compile and prepare package for lazy loading in method for ‘brick’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘brick’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘brick’ with signature ‘x="SpatRaster"’: no definition for class “SpatRaster” in method for ‘coerce’ with signature ‘"STFDF","RasterBrick"’: no definition for class “STFDF” in method for ‘coerce’ with signature ‘"STSDF","RasterBrick"’: no definition for class “STSDF” in method for ‘coerce’ with signature ‘"asc","RasterLayer"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"RasterLayer","asc"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"kasc","RasterBrick"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kasc","RasterStack"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kde","RasterLayer"’: no definition for class “kde” in method for ‘coerce’ with signature ‘"grf","RasterBrick"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"grf","RasterLayer"’: no definition for class “grf” Creating a generic function for ‘ncol’ from package ‘base’ in package ‘raster’ in method for ‘extent’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘extract’ with signature ‘x="Raster",y="sf"’: no definition for class “sf” in method for ‘mask’ with signature ‘x="Raster",mask="sf"’: no definition for class “sf” in method for ‘raster’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘raster’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘raster’ with signature ‘x="asc"’: no definition for class “asc” in method for ‘raster’ with signature ‘x="kde"’: no definition for class “kde” in method for ‘raster’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘raster’ with signature ‘x="SpatRaster"’: no definition for class “SpatRaster” in method for ‘rasterize’ with signature ‘x="sf",y="Raster"’: no definition for class “sf” Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘raster’ in method for ‘setValues’ with signature ‘x="RasterLayerSparse"’: no definition for class “RasterLayerSparse” in method for ‘spplot’ with signature ‘obj="SpatRaster"’: no definition for class “SpatRaster” in method for ‘spplot’ with signature ‘obj="SpatVector"’: no definition for class “SpatVector” in method for ‘stack’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘stack’ with signature ‘x="SpatRaster"’: no definition for class “SpatRaster” help installing help indices * building package indices testing if installed package can be loaded from temporary location checking absolute paths in shared objects and dynamic libraries testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path creating tarball packaged installation of ‘raster’ as ‘raster_3.3-13_R_i386-pc-solaris2.10.tar.gz’ DONE (raster) installing source package ‘gdata’ ... package ‘gdata’ successfully unpacked and MD5 sums checked using staged installation R data inst byte-compile and prepare package for lazy loading help installing help indices * building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path creating tarball packaged installation of ‘gdata’ as ‘gdata_2.18.0_R_i386-pc-solaris2.10.tar.gz’ DONE (gdata) ERROR: dependency ‘units’ is not available for package ‘sf’ removing ‘/export/home/X5SHRqC/R/sf’ installing source package ‘spData’ ... package ‘spData’ successfully unpacked and MD5 sums checked using staged installation R data moving datasets to lazyload DB * inst byte-compile and prepare package for lazy loading help installing help indices * building package indices testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path creating tarball packaged installation of ‘spData’ as ‘spData_0.3.8_R_i386-pc-solaris2.10.tar.gz’ DONE (spData) installing source* package ‘gmodels’ ... package ‘gmodels’ successfully unpacked and MD5 sums checked using staged installation R byte-compile and prepare package for lazy loading help installing help indices * building package indices testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path creating tarball packaged installation of ‘gmodels’ as ‘gmodels_2.18.1_R_i386-pc-solaris2.10.tar.gz’ DONE (gmodels) ERROR: dependencies ‘units’, ‘sf’ are not available for package ‘lwgeom’ removing ‘/export/home/X5SHRqC/R/lwgeom’ ERROR: dependency ‘sf’ is not available for package ‘spdep’ * removing ‘/export/home/X5SHRqC/R/spdep’

The downloaded source packages are in ‘/export/home/X5SHRqC/Rtemp/RtmpiQ7mLn/downloaded_packages’ Running R CMD build... checking for file ‘/export/home/X5SHRqC/Rtemp/RtmpiQ7mLn/remotes77075a635a2/dependencycheckR/DESCRIPTION’ ... OK preparing ‘dependencycheckR’: checking DESCRIPTION meta-information ... OK checking for LF line-endings in source and make files and shell scripts checking for empty or unneeded directories building ‘dependencycheckR_0.0.0.9000.tar.gz’ Installing package into ‘/export/home/X5SHRqC/R’ (as ‘lib’ is unspecified) ERROR: dependencies ‘lwgeom’, ‘sf’, ‘spdep’ are not available for package ‘dependencycheckR’ * removing ‘/export/home/X5SHRqC/R/dependencycheckR’ Warning messages: 1: In i.p(...) : installation of package ‘units’ had non-zero exit status 2: In i.p(...) : installation of package ‘sf’ had non-zero exit status 3: In i.p(...) : installation of package ‘lwgeom’ had non-zero exit status 4: In i.p(...) : installation of package ‘spdep’ had non-zero exit status 5: In i.p(...) : installation of package ‘/export/home/X5SHRqC/Rtemp/RtmpiQ7mLn/file770377e509c/dependencycheckR_0.0.0.9000.tar.gz’ had non-zero exit status

============== Running R CMD check using log directory ‘/export/home/X5SHRqC/dependencycheckR.Rcheck’ using R version 4.0.2 (2020-06-22) using platform: i386-pc-solaris2.10 (32-bit) using session charset: UTF-8 using options ‘--no-manual --no-build-vignettes’ checking for file ‘dependencycheckR/DESCRIPTION’ ... OK this is package ‘dependencycheckR’ version ‘0.0.0.9000’ package encoding: UTF-8 checking package namespace information ... OK checking package dependencies ... ERROR Packages required but not available: 'lwgeom', 'sf', 'spdep'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. * DONE

Status: 1 ERROR See ‘/export/home/X5SHRqC/dependencycheckR.Rcheck/00check.log’ for details.

Saving artifacts Cleaning up user and home directory SSH: Connecting from host [unknown] SSH: Connecting with configuration [files] ... SSH: Disconnecting configuration [files] ... SSH: Transferred 17 file(s) Build step 'Send files or execute commands over SSH' changed build result to SUCCESS Pinging https://builder.r-hub.io/build/SUCCESS/dependencycheckR_0.0.0.9000.tar.gz-090bc1453e3b4bbd9edba2a2372d722e/2020-09-05T00:54:12Z {"status":"ok"} Finished: SUCCESS

christopherkenny/dependencycheckR documentation built on Sept. 6, 2020, 12:06 a.m.