calc_correlation_plot: Get the correlation data for plotting.
In churchill-lab/qtl2api: QTL2 API Library

calc_correlation_plot

R Documentation

Get the correlation data for plotting.

Description

Perform a correlation analysis on an 'id' for a 'dataset'. By default, the correlation will be against the same dataset, but a different dataset can be specified with 'dataset_correlate'. Return x and y values for plotting.

Usage

calc_correlation_plot(
  dataset,
  id,
  dataset_correlate,
  id_correlate,
  intcovar = NULL,
  use_qr = TRUE,
  backfill_NA = TRUE
)

Arguments

`dataset`	The dataset object
`id`	The unique id in the dataset.
`dataset_correlate`	The dataset to correlate against, dataset if INVALID or NULL.
`id_correlate`	The identifier from the correlate dataset.
`intcovar`	The interactive covariate.
`use_qr`	'TRUE' to use qr decomposition.
`backfill_NA`	'TRUE' if we need to impute, we backfill the NAs.