calc_lod_peaks_for_annot: Get all the peaks for an id.

In churchill-lab/qtl2api: QTL2 API Library

Get all the peaks for an id.

Description

Get all the peaks for an id.

Usage

calc_lod_peaks_for_annot(
  dataset,
  id,
  threshold = 6,
  peakdrop = 2,
  thresholdX = 6,
  peakdropX = 2,
  n_cores = 0,
  calc_diff = FALSE
)

Arguments

dataset	the dataset object
id	the unique id in the dataset
threshold	if set, qtl2::find_peaks is used
peakdrop	if set, qtl2::find_peaks is used
thresholdX	if set, qtl2::find_peaks is used
peakdropX	if set, qtl2::find_peaks is used
n_cores	number of cores to use (0=ALL)
calc_diff	compute the difference between additive and covariate

Value

a tibble of the peaks.

churchill-lab/qtl2api documentation built on April 17, 2025, 3:27 a.m.