blca_class: Subtype annotation for 1750 BLCA samples in 6 different...

In cit-bioinfo/BuildConsensus: Build a consensus classification from multiple classification methods

Description

A dataset containing class annotation for muscle-invasive bladder cancer samples in 6 different published classification systems.

Usage

blca_class

Format

A data frame with 1750 observations of 6 variables:

Baylor.subtype

A subtyping system consisting of two classes: 'Basal' and 'Differentiated'

ChapelHill.subtype

A subtyping system consisting of two classes: 'Luminal' and 'Basal'.

CIT.subtype

A subtyping system consisting of six classes: MC1 to MC6

MDA.subtype

A subtyping system consisting of three classes: 'luminal', 'p53-like' and 'basal'

TCGA2017.subtype

A subtyping system consisting of five classes: 'Luminal_papillary', 'Luminal_infiltrated', 'Luminal', Neuronal' and 'Basal_squamous'

Lund2017.subtype

A subtyping system consisting of ten classes: 'GU', 'GU-Inf', 'UroA-Prog', 'Uro-Inf', 'UroB', 'UroC', 'Mes-like', 'Ba/Sq', 'Ba/Sq-Inf','Sc/NE-like'

Author(s)

Aurelie Kamoun

References

https://www.biorxiv.org/content/10.1101/488460v2

cit-bioinfo/BuildConsensus documentation built on Nov. 27, 2019, 11:29 a.m.