consensus.CoC: consensus.CoC
In cit-bioinfo/BuildConsensus: Build a consensus classification from multiple classification methods
Description
Usage
Arguments
Value
Note
Author(s)
Description
Compare and cluster various classification systems using a "Cluster of Cluster" approach.
Usage
1
consensus.CoC(annot.class, outdir, maxK=8)
Arguments
annot.class
Dataframe of samples annotated according to the several classification systems to compare.
outdir
Path to the directory where to store plots and results. A new directory will be created if the supplied path does not exist.
maxK
Integer value. maximum cluster number to evaluate.
Value
A list of length maxK. Each element is a list containing consensusMatrix (numerical matrix), consensusTree (hclust), consensusClass (consensus class asssignments)
Note
This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact CITR@ligue-cancer.net
Author(s)
Aurelie Kamoun
cit-bioinfo/BuildConsensus documentation built on Nov. 27, 2019, 11:29 a.m.
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Description Usage Arguments Value Note Author(s)
Description
Compare and cluster various classification systems using a "Cluster of Cluster" approach.
Usage
1 | consensus.CoC(annot.class, outdir, maxK=8)
|
Arguments
annot.class |
Dataframe of samples annotated according to the several classification systems to compare. |
outdir |
Path to the directory where to store plots and results. A new directory will be created if the supplied path does not exist. |
maxK |
Integer value. maximum cluster number to evaluate. |
Value
A list of length maxK. Each element is a list containing consensusMatrix (numerical matrix), consensusTree (hclust), consensusClass (consensus class asssignments)
Note
This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact CITR@ligue-cancer.net
Author(s)
Aurelie Kamoun
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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