Description Usage Arguments Value Note Author(s)
This function maps each gene of the used-provided dataset on the scale used by GSE20238 by applying a linear regression on deciles for each gene.
1 | MS.liverK.convert(userData)
|
userData |
A gene expression profile matrix, with genes in line and samples in colmumns, aggregated by genes. The genes, specified as HUGO gene symbols, must be put as row names. |
a data frame containing the mapped gene expressions, that can be used as input for MS.liverK.subtypes
.
This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact CITR@ligue-cancer.net
F Petitprez
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