MS.liverK.convert: converts a dataset by mapping it on a platform used to...
In cit-bioinfo/MS.liverK: Subtyping of Liver Cancer Samples According to Various Unsupervised or Supervised Classifiers Based on Gene Expression Data
Description
Usage
Arguments
Value
Note
Author(s)
Description
This function maps each gene of the used-provided dataset on the scale used by GSE20238 by applying a linear regression on deciles for each gene.
Usage
1
MS.liverK.convert(userData)
Arguments
userData
A gene expression profile matrix, with genes in line and samples in colmumns, aggregated by genes. The genes, specified as HUGO gene symbols, must be put as row names.
Value
a data frame containing the mapped gene expressions, that can be used as input for MS.liverK.subtypes.
Note
This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact CITR@ligue-cancer.net
Author(s)
F Petitprez
cit-bioinfo/MS.liverK documentation built on Aug. 14, 2019, 10:34 a.m.
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Description Usage Arguments Value Note Author(s)
Description
This function maps each gene of the used-provided dataset on the scale used by GSE20238 by applying a linear regression on deciles for each gene.
Usage
1 | MS.liverK.convert(userData)
|
Arguments
userData |
A gene expression profile matrix, with genes in line and samples in colmumns, aggregated by genes. The genes, specified as HUGO gene symbols, must be put as row names. |
Value
a data frame containing the mapped gene expressions, that can be used as input for MS.liverK.subtypes.
Note
This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact CITR@ligue-cancer.net
Author(s)
F Petitprez
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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