MS.liverK.plot: plots the results of 'MS.liverK.subtypes'

In cit-bioinfo/MS.liverK: Subtyping of Liver Cancer Samples According to Various Unsupervised or Supervised Classifiers Based on Gene Expression Data

Description

Given the results obtained with MS.liverK.subtypes(), this function plots a segment plot and heatmaps representing the repartition and correspondance of classes.

Usage

MS.liverK.plot(subtypes,col=NULL)

Arguments

subtypes	unsup element from MS.liverK.subtypes()
col	named vector containing the colors to use for each class. Names must contain each of "A","B","subgroup A","subgroup B","S1","S2","S3","G1","G2","G3","G4","G5","G6","CTNNB1","Inflammation","Polysomy chr7","Proliferation","Unannotated","+","-", for Lee's, Roessler's, Hoshida's, Chiang's, Boyault's and EPCAM.AFP classifications.

Value

a plot of all results from subtypes. Returns NULL.

Note

This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact [e-mail]

Author(s)

F Petitprez

cit-bioinfo/MS.liverK documentation built on Aug. 14, 2019, 10:34 a.m.