Description Usage Arguments Examples
Produces simulations of extinction dates and sightings on a known landscape with mixed-certainty, mixed-accuracy data
Returns a list of two objects: sightings (data frame of sightings with columns "year", "longitude", "latitude", "sighting", and "real") and grid (raster onto which to interpolate your results)
1 | errorSims(n = 10, pts = 1, ipts = 2, p = 0.1)
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n |
Dimension of simulated landscape (nxn grid) |
pts |
Number of valid sightings per year |
ipts |
Number of invalid points total (any year) |
p |
Proportion of valid sightings recorded as uncertain |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | x <- errorSims(n=10,pts=2,ipts=5,p=0.2)
ole <- spat.OLE(x$sightings[,1:4], x$grid[[2]], k.nn=7, N.nn=10, randomize=TRUE, adaptive=FALSE, reps=100, qualitycontrol = FALSE)
ole.qc <- spat.OLE(x$sightings[,1:4], x$grid[[2]], k.nn=7, N.nn=10, randomize=TRUE, adaptive=FALSE, reps=100, qualitycontrol = TRUE)
sb1 <- spat.SB(x$sightings[,1:4], x$grid[[2]], k.nn=5, N.nn=7, randomize=TRUE, reps=100, T.bound=60, model.num=1)
sb2 <- spat.SB(x$sightings[,1:4], x$grid[[2]], k.nn=5, N.nn=7, randomize=TRUE, reps=100, T.bound=60, model.num=2)
par(mfrow=c(1,1))
plot(r)
points(x$sightings[,1:2],col=ifelse(x$sightings$real==0,"blue",ifelse(x$sightings$sighting==2,"red","black")),pch=16,cex=1.3)
par(mfrow=c(2,2))
plot(ole$Mean.OLE)
plot(ole.qc$Mean.OLE)
plot(sb1$Mean.SB)
plot(sb2$Mean.SB)
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