hamming_filter: Filter reference barcodes with a given read using hamming...
In clintko/BarcodeMatcher: Barcode Matcher
Description
Usage
Arguments
Examples
View source: R/hamming_filter.R
Description
The reference barcodes are first constructed into a tree. Hamming distance between
each barcode and the given read is calculated. The barcodes with hamming distance
smaller than the specify threshold will be return.
Usage
1
hamming_filter(barcodes, read, threshold = 2)
Arguments
barcodes
the file path of the fasta file
read
the output file path of the fastq sequence
Examples
1
2
out = hamming_filter(c("ATTCG", "ATTCA", "AAAAA", "AATAA"), "ATTCG")
out == c("ATTCA", "ATTCG") # TRUE TRUE
clintko/BarcodeMatcher documentation built on May 30, 2019, 12:02 p.m.
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Description Usage Arguments Examples
View source: R/hamming_filter.R
Description
The reference barcodes are first constructed into a tree. Hamming distance between each barcode and the given read is calculated. The barcodes with hamming distance smaller than the specify threshold will be return.
Usage
1 | hamming_filter(barcodes, read, threshold = 2)
|
Arguments
barcodes |
the file path of the fasta file |
read |
the output file path of the fastq sequence |
Examples
1 2 | out = hamming_filter(c("ATTCG", "ATTCA", "AAAAA", "AATAA"), "ATTCG")
out == c("ATTCA", "ATTCG") # TRUE TRUE
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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