getFBMSuccessor: This method is used to calculate the next state

In clsdavid/FBNNet2_public: Fundamental Boolean Model and Networks

This method is used to calculate the next state

Description

This method is used to calculate the next state

Usage

getFBMSuccessor(
  fbnNetwork,
  previous_states,
  current_step,
  genes,
  type = c("synchronous", "asynchronous"),
  decayIndex = c()
)

Arguments

fbnNetwork	An object of FBNNetwork
previous_states	A vector of current gene state
current_step	The index of the current step
genes	a list of genes which index order must match with the current state
type	A type of Boolean network update schema chosen from synchronous, asynchronous based. Asynchronous will randomly pick up a gene to process at time.
decayIndex	An value indicates the period of time when to degrade an activated gene if no activators presented. It is usually one time step

Value

A list object that contains reconstructed time series and FBN network

Examples

data(ExampleNetwork)
trainingseries<-FBNDataReduction(BoolNet::generateTimeSeries(ExampleNetwork,
    32,10))
cube<-constructFBNCube(target_genes = ExampleNetwork$genes,
                       conditional_genes = ExampleNetwork$genes,
                       timeseriesCube = trainingseries,
                       maxK = 3,
                       temporal = 1,
                       useParallel = FALSE)
NETWORK2<-mineFBNNetwork(cube,ExampleNetwork$genes)
state<-c('0','1','1','0','1')
names(state)<-c('Gene1','Gene2','Gene3','Gene4','Gene5')
getFBMSuccessor(NETWORK2, 
                previous_states= state,
                current_step = 2,
                genes = names(state),
                type = 'synchronous')

clsdavid/FBNNet2_public documentation built on April 20, 2023, 4:36 p.m.