plotNetwork: A function to plot the Fundamental boolean networks

In clsdavid/FBNNet2_public: Fundamental Boolean Model and Networks

A function to plot the Fundamental boolean networks

Description

A function to plot the Fundamental boolean networks

Usage

plotNetwork(
  FBNNetwork,
  target_genes = c(),
  type = c("static", "staticSlice", "dynamic", "forward_1a", "forward_2a", "forward_3a",
    "forward_4a", "backward_1a", "backward_2a", "forward_1b", "forward_2b", "forward_3b",
    "forward_4b", "backward_1b", "backward_2b"),
  expand_level = 2,
  output_network = FALSE,
  timeseries_matrix = NULL,
  start_time_point = 1,
  end_time_point = 1,
  target_time_point = 1
)

Arguments

FBNNetwork	The FBN networks
target_genes	A list of target genes
type	The visualization type
expand_level	The level of expandation
output_network	Optional, if TRUE, then output the FBN Network
timeseries_matrix	The timeseries matrix that used to plot dynamic networks.
start_time_point	The start time point
end_time_point	The end time point
target_time_point	The target time point

clsdavid/FBNNet2_public documentation built on April 20, 2023, 4:36 p.m.