Man pages for clsong/topodetective
Infer topology of species interactions from time series of species abundance
| choose_regression_model | Find a regression method (linear, lasso, or ridge) |
| differentiate_ts | Get the deriative of a time series |
| evaluate_fit | Evaluate how close the simulated time series with fitted... |
| fit_interaction_parameters | Fit interaction matrix with given topology and intrinsic... |
| generate_time_series | Simulated time series of species abundances |
| generate_time_series_LV | Simulated time series of species abundances |
| generate_top_model_candidates | Get the combinatories of models from highest R^2 from each... |
| get_classic_dynamics | Get the parameters for some classic population dynamics |
| get_LV_dynamics | Get the parameters for the three phases of LV dynamics... |
| get_topology_label | Get the label of the specific topology |
| pipe | Pipe operator |
| plot_interaction_topology | Plot the interaction network and intrinsic growth rates |
| plot_time_series | Plot time series of species abundance |
| plot_true_vs_simu | Plot simulated time series with fitted parameters vs true... |
| simualte_fitted_dynamics | Simulate time series from fitted parameters |
| topodetective-package | topodetective: Infer topology of species interactions from... |
