bartForOneGene: use BART to generate a network structure prediction

In cmatKhan/bartNP: Execute BART on TF perturbation data

Description

The following can be used for memory and performance profiling http://adv-r.had.co.nz/memory.html http://adv-r.had.co.nz/Profiling.html#measure-perf https://cran.r-project.org/web/packages/profmem/vignettes/profmem.html

Usage

bartForOneGene(regulators_predictor_matrix, gene_response_array, ...)

Arguments

regulators_predictor_matrix	A sample x regulator matrix where the values are expression of the given regulator j in sample i
gene_response_array	Expression of a given gene in i samples. Length of gene_response_array must be the same as the rows in regulators_predictor_matrix
...	additional arguments to BART::mc.wbart

Value

a BART object

cmatKhan/bartNP documentation built on Dec. 19, 2021, 5:16 p.m.