Man pages for cmatKhan/mislabels
Biostrings Algorithms Final Project
| add_genotype_table | Fill the sample_genotype database from VCF file(s) |
| compare_vectors | compare two SNP vectors |
| conduct_experiment | Conduct an experiment to attempt to map RNAseq librarys to... |
| create_bam_pileup_table | Create a sqlite database to store sample/genotype data |
| create_plink_region_filter | Create a plink region filter from GRangeList |
| create_sample_geno_db | Create a sqlite database to store sample/genotype data |
| difference_between_genomes_df | comparing RNAseq vectors to quantify similarity/difference... |
| equivalence_class_dist_matrix | Create variants of the distance matrix |
| filename_id_subject_mislabel_map | a dataframe to describe the samples to identify |
| filter_comparison_plt | plot comparing number of uncertains by position |
| genome_vectors | generate Snp vectors from each genome |
| high_expr_genes | A GRangeList of highly expressed genes |
| highly_expressed_gene_virtual_table | create virtual table of only highly expressed gene regions in... |
| mapqOver10_no_secondary_results | results of the most stringent filter on the pileup |
| RNAseq_diference_btwn_pileup_df | comparing RNAseq vectors to quantify similarity/difference... |
| rnaseq_vector | get vector of consensus bases over a given set of SNPs in an... |
| sample_snp_loc_from_pileup | extract unique SNP locations from RNAseq library |
| sample_snp_ranges | extract unique SNP locations from a sample (view in the... |
