compare_results: Calculate statistcs between EM results and ChIP-seq data

In cmboye/CENTIPEDE_Reimplementation: Reimplementation of CENTIPEDE

Description

Calculate statistcs between EM results and ChIP-seq data

Usage

compare_results(results, region_labels, chip_file)

Arguments

results	a binary vectory of bound status predictions
region_labels	dataframe of coordinates corresponding to results with columns 'chr','start','end' and rows as the coordinates in "chr:start-end" format
chip_file	a bed file of ChIP-seq peaks

Value

A list of statistics including precision, FDR, FPR, sensitivity,and a dataframe labeled_df which is results with added columns for predicted labels and ChIP-seq labels

cmboye/CENTIPEDE_Reimplementation documentation built on Dec. 23, 2021, 10:19 p.m.