Man pages for cmfield/phylloR
R package for phyllosphere analysis
| igraphFromSummary | Function to construct an igraph network from fold-change and... |
| makeCDS | Function to make a compatible data set (CDS) and calculate... |
| phylloR | Package for microbiome analysis of the phyllosphere |
| plotBipartiteSummary | Function to plot a bipartite graph to summarise strain-strain... |
| plotCommunity | Function to produce a bar or violin plot of an individual... |
| plotCommunityChanges | Function to plot the changes in the community at a strain... |
| plotCommunityPie | Function to produce a pie chart of an individual community. |
| plotCommunityStack | Function to produce a stacked bar chart of a phyllosphere... |
| plotPCA | Function to calculate and plot a PCA comparing sample groups... |
| plotVolcano | Function to produce a volcano plot of DESeq2 results |
| summariseResults | Function to summarise the results of multiple phyllosphere... |
| treatmap | Function to plot a heatmap aligned with a phylogenetic tree. |
