plotVolcano: Function to produce a volcano plot of DESeq2 results

In cmfield/phylloR: R package for phyllosphere analysis

Function to produce a volcano plot of DESeq2 results

Description

Function to produce a volcano plot of DESeq2 results

Usage

plotVolcano(cds, cutoff = 0.05, pcols = NULL, pcex = NULL,
  pborder = NULL, hili = TRUE, labels = TRUE, ranks = NULL)

Arguments

cds	A compatible data set produced by the makeCDS() function.
cutoff	A p-value cutoff to determine which strains will be included individually in the plot.
pcols	An optional vector of point colors
pcex	An optional numeric vector indicating the size of the points
pborder	An optional vector of border colors for the points
hili	Logical; whether to highlight significant points or not
labels	Logical; whether to label significant points or not
ranks	A vector of ranks for the points in the plot that will be labelled accordingly

Details

None.

Author(s)

Chris Field <[e-mail]>

Examples

None

cmfield/phylloR documentation built on Aug. 25, 2023, 10:07 a.m.