plotCommunityStack: Function to produce a stacked bar chart of a phyllosphere...

In cmfield/phylloR: R package for phyllosphere analysis

Function to produce a stacked bar chart of a phyllosphere community

Description

Function to produce a stacked bar chart of a phyllosphere community

Usage

plotCommunityStack(counts, level = "Phlass", taxLevels = NULL,
  meta = NULL, cols = phlassColors, mode = "relative")

Arguments

counts	A count table in which the rows are strains or OTUs and the columns are samples.
level	Taxonomic level at which to summarise the community
taxLevels	Optional vector of taxonomic levels, in case you only want to plot some or reorder them
meta	Optional metadata that should be used to group samples
cols	A named vector of colors for the different taxonomic levels
mode	Either 'relative' or 'absolute' for calculating abundance

Value

None.

Author(s)

Chris Field <[e-mail]>

Examples

None

cmfield/phylloR documentation built on Aug. 25, 2023, 10:07 a.m.