infection_inputs_get_pars: Function to input observed equilibrium infection values and...
In cmhoove14/DDNTD: Density Dependence in Neglected Tropical Diseases

View source: R/schisto_age_structured_models.R

Uses 'eq_W_get_alpha', 'eq_Ws_get_Omega_Lambda0', 'convert_burden_egg_to_worm', 'Lambda_get_N_eq', and 'I_get_Lambda' to convert input infection values (mean egg burden and infection prevalence in adult and child populations, infected snail prevalence) into estimates of model parameters

1 2	infection_inputs_get_pars(W_A, kap_A, H_A, cvrg_A, W_C, kap_C, H_C, cvrg_C, K_ratio = 1, I_P, pars)

`W_A`	equilibrium mean worm burden in adult population, can be estimated from egg burden and prevalence using 'convert_burden_egg_to_worm'
`kap_A`	equilibrium clumping parameter in adult population, can be estimated from egg burden and prevalence using 'convert_burden_egg_to_worm'
`H_A`	adult human population size
`cvrg_A`	MDA coverage of the adult population
`W_C`	equilibrium mean worm burden in child population, can be estimated from egg burden and prevalence using 'convert_burden_egg_to_worm'
`kap_C`	equilibrium clumping parameter in child population, can be estimated from egg burden and prevalence using 'convert_burden_egg_to_worm'
`H_C`	child human population size
`cvrg_C`	MDA coverage of the child population
`K_ratio`	ratio of snail carrying capacity to human population size. defaults to 1, but should be increased for environments/communities that have particularly intense snail habitat or tranmission
`I_P`	infected snail prevalence, observed or input
`pars`	additional model parameters