ReadRaw: Get raw data and prepare for Plan B smooth

In cmlegault/PlanBsmooth: Applies Plan B Smooth Approach to Biomass Index Data

Description

Reads in csv file with Year in first column and as many survey indices as desired, standardizes series if desired, computes mean of all or user selected surveys, outputs csv file with Year and Mean Index.

Usage

ReadRaw(
  data.dir,
  data.file.name,
  od = ".",
  standardize = FALSE,
  usesurvey = NA,
  narmavgflag = FALSE,
  saveplots = FALSE,
  nameplots = ""
)

Arguments

data.dir	directory with csv file
data.file.name	name of csv file (without the .csv extension)
od	directory for output (default=working directory)
standardize	true/false flag to divide by mean of time series (default=FALSE)
usesurvey	vector of true/false to select surveys to average (default=NA which means use all)
narmavgflag	true/false flag for na.rm setting in average across multiple surveys (default=FALSE)
saveplots	true/false flag to save output to od (default=FALSE)
nameplots	added to start of saved files (default=""), spaces not recommended

cmlegault/PlanBsmooth documentation built on Aug. 31, 2021, 8:48 p.m.