RunRetro: Wrapper function to conduct retrospective analysis.

In cmlegault/PlanBsmooth: Applies Plan B Smooth Approach to Biomass Index Data

Description

Conducts standard retrospective analysis on predicted biomass index, inlcuding reporting Mohn's rho. Also examines retrospective analysis of multiplier (inclusing years prior to terminal year).

Usage

RunRetro(
  dat,
  od = ".",
  my.title = "",
  terminal.year = NA,
  nyears = 33,
  loess.span = NA,
  npeels = 7,
  saveretroplot = FALSE,
  showplots = TRUE,
  nameplots = ""
)

Arguments

dat	data frame of Year and avg (the biomass index)
od	output directory where plots are saved (default=working directory)
my.title	title for time series plot with loess smooth (default = "")
terminal.year	last year used in smooth (allows easy retro analysis) (default = NA = most recent)
nyears	number of years to use in loess (default = 33)
loess.span	proportion time series used in smoothing (default = NA, calculates span=9.9/nyears)
npeels	how many years to remove in retrospective analysis
saveretroplot	true/false flag to save retrospective plot to od (default=FALSE)
showplots	true/false flag to display plots in window (default=TRUE)
nameplots	added to start of saved files (default=""), spaces not recommended

cmlegault/PlanBsmooth documentation built on Aug. 31, 2021, 8:48 p.m.