tests/testthat/_snaps/growth_rate.md

In cmu-delphi/epiprocess: Tools for basic signal processing in epidemiology

global param constructor errors when required

Code
  growth_rate_params(df = -5)
Condition
  Error in `growth_rate_params()`:
  ! Assertion on 'df' failed: Element 1 is not >= 0.

Code
  growth_rate_params(nlambda = 5:8)
Condition
  Error in `growth_rate_params()`:
  ! Assertion on 'nlambda' failed: Must have length 1.

new setup args and warnings are as expected

Code
  growth_rate(y = -10:10, log_scale = TRUE)
Condition
  Warning:
  `y` contains 0 or negative values. Taking logs may produce strange results.
  Error in `growth_rate()`:
  ! Either the first or last `y` values are not finite. This may be due to `log_scale = TRUE`.

Code
  growth_rate(y = -10:10, log_scale = TRUE, method = "smooth_spline")
Condition
  Warning:
  `y` contains 0 or negative values. Taking logs may produce strange results.
  Error in `growth_rate()`:
  ! Either the first or last `y` values are not finite. This may be due to `log_scale = TRUE`.

Code
  growth_rate(y = 1:30, x = c(1:20, NA, 22:30), na_rm = TRUE)
Condition
  Error in `growth_rate()`:
  ! Neither `x` nor `x0` may contain `NA`s.

Code
  growth_rate(y = 1:20, method = "smooth_spline", params = growth_rate_params(
    lambda = 1:20))
Condition
  Error in `growth_rate()`:
  ! "smooth_spline" requires 1 `lambda` but more were used.

parser sees all cases

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! When `cv = TRUE`, `df` must be `NULL` or character and `lambda` must be `NULL` or a vector.

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! When `cv = TRUE`, `df` must be `NULL` or character and `lambda` must be `NULL` or a vector.

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! When `cv = TRUE`, `df` must be `NULL` or character and `lambda` must be `NULL` or a vector.

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! When `cv = TRUE`, `df` must be `NULL` or character and `lambda` must be `NULL` or a vector.

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! When `cv = TRUE`, `df` must be `NULL` or character and `lambda` must be `NULL` or a vector.

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! `df` a character implies using CV, but also setting `lambda` to a single value implies no CV.

Code
  parse_trendfilter_params(l)
Condition
  Error in `parse_trendfilter_params()`:
  ! `df` and `lambda` cannot both be scalars.

cmu-delphi/epiprocess documentation built on Feb. 22, 2025, 9:26 a.m.