Man pages for coleoguy/evobir
Evolutionary Biology in R
| 1.fasta | simulated SNP data |
| AncCond | Calculate the mean of a continuous character at transitions... |
| CalcD | Calculate Patterson's D-statistic |
| countTrees | Calculate the number of times a set of topologies occur |
| evobiR-package | evobiR: Evolutionary Biology in R |
| fix.simmap | Fix a stochastic map with failed edges |
| FuzzyMatch | Find Close Matches in a tree and dataset |
| getNe | Calculate the variance effective population size |
| GetTipRates | Calculate the rate of evolution on the leaves of a phylogeny |
| horn.beetle | Gnatocerus measurements |
| hym.tree | Phylogenetic tree |
| make.simmap2 | Modified stochastic mapping which is resistant to model... |
| mite.trait | phenotype data for mites |
| Pfsa | Calculate the proportion of different classes of fusions as a... |
| plot.phyloscaled | Phylogenetic visualization of heterogenity in discrete... |
| ReOrderAlignment | Re-order sequences based on starting position |
| ResSel | Selection on Residuals |
| SampleTrees | Select a random sample of trees |
| scaleTreeRates | Phylogeneitc analysis of heterogeneity in discrete character... |
| SlidingWindow | Sliding window analysis |
| SuperMatrix | creates a supermatrix from multiple gene alignments |
| trees.mite | 10 Phylogenetic trees |
| trees.nex | 100 Phylogenetic trees |
| WinCalcD | Calculate Patterson's D-statistic in sliding windows |
