FuzzyMatch: Find Close Matches in a tree and dataset

In coleoguy/evobir: Evolutionary Biology in R

Find Close Matches in a tree and dataset

Description

When assembling data from different sources typos can sometimes cause a loss of perfect matches between trees and datasets. This function helps you find these close matches that can be hand curated to keep as many species as possible in your analysis.

Usage

FuzzyMatch(tree, data, max.dist)

Arguments

tree	a phylogenetic tree of the class "phylo".
data	character vector with the names from your dataset.
max.dist	This is the maximum number of characters that can differ between your tree and data and still be recognized as a close match.

Value

A dataframe with the following rows:

Name in data
Name in tree
Number of differences

Author(s)

Heath Blackmon

References

http://coleoguy.github.io/

Examples

data(hym.tree)
names <- c("Pepsis_elegans", "Plagiolepis_alluaudi", "Pheidele_lucreti",
           "Meliturgula_scriptifronsi", "Andrena_afimbriat")
FuzzyMatch(tree = hym.tree, data = names, max.dist=3)

coleoguy/evobir documentation built on May 8, 2024, 6:57 p.m.