cbtop10000: Top 10,000 rows for v1, v2, and v3 cell barcode whitelist...
In compbiomed/scuff: Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
cbtop10000 R Documentation
Top 10,000 rows for v1, v2, and v3 cell barcode whitelist files
Description
The first 10,000 cell barcodes in v1 (737K-april-2014_rc.txt), v2
(737K-august-2016.txt), and v3 (3M-february-2018.txt) cell barcode
whitelist files. This object is used for testing the validity of input
assay chemistry validCb for tenxBamqc function. The cell
barcodes for the first 10,000 alignments in the input BAM file will be
mapped to each chemistry's whitelist to determine the assay chemistry of
the BAM file.
Usage
cbtop10000
Format
A data.table object.
compbiomed/scuff documentation built on March 28, 2024, 10:54 a.m.
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| cbtop10000 | R Documentation |
Top 10,000 rows for v1, v2, and v3 cell barcode whitelist files
Description
The first 10,000 cell barcodes in v1 (737K-april-2014_rc.txt), v2
(737K-august-2016.txt), and v3 (3M-february-2018.txt) cell barcode
whitelist files. This object is used for testing the validity of input
assay chemistry validCb for tenxBamqc function. The cell
barcodes for the first 10,000 alignments in the input BAM file will be
mapped to each chemistry's whitelist to determine the assay chemistry of
the BAM file.
Usage
cbtop10000
Format
A data.table object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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