Man pages for compomics/search-all-assess-subset
An implementation of the Search All, Asses Subset strategy for FDR estimation shotgun proteomics.
| calculate_fdr | Calculates qvalues on the subset PSMs. |
| check_input | .. content for (no empty lines) .. |
| dpi0 | Density function for the pi_0 distribution. |
| id_is_present | Checks if protein id appears in the headers of a fasta file. |
| parse_msgf_mzid | Parses a mzID file generated by MS-GF+. |
| pi0plot | Creates density plot of the pi0 distribution. |
| plot_diag | Plot diagnostic plots to evaluate assumptions from the search... |
| plot_theo_dist | plots the theoretical distribution of all components in the... |
| PPplot | Creates PP plot of two empirical distributions. |
| preprocess | Preprocess data from a MS-GF mzID file. |
| rpi0 | Random generation for the pi_0 distribution. |
| saas_gui | Launches the GUI version of saas. |
| sample_dataset | Sample scores for a random dataset |
| server | server |
| simulate_subset | Random generation of a dataset after TDA. |
| ui | UI shiny app |
