do_query | R Documentation |
Sends a query to the metabolomics database and returns the result. Note that while objects derived from mw_base can be used the recommended approach is to use character inputs.
do_query(context, input_item, input_value, output_item) ## S4 method for signature 'character,character,character,character' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_moverz_context,list,character,mw_output_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_moverz_context,list,character,character' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_moverz_context,list,character,missing' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_moverz_context,character,character,missing' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'character,character,character,missing' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_exactmass_context,list,character,mw_output_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_exactmass_context,list,character,character' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_exactmass_context,list,character,missing' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_exactmass_context,character,character,missing' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'character,character,character,missing' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_context,mw_input_item,character,mw_output_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_context,mw_input_item,character,mw_SE_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature ## 'mw_context,mw_input_item,character,mw_untarg_SE_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_context,mw_input_item,character,mw_DE_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature ## 'mw_context,mw_input_item,character,mw_untarg_DE_item' do_query(context, input_item, input_value, output_item) ## S4 method for signature 'mw_context,mw_input_item,character,mw_MAE_item' do_query(context, input_item, input_value, output_item)
context |
A valid context name (character) |
input_item |
A valid input_item name (character) |
input_value |
The value for the input item (character). |
output_item |
A valid output_item (character). |
A data.frame, or other output appropriate to the output_item.
# Get a summary of all studies with "diabetes" in the title df = do_query( context = 'study', input_item = 'study_title', input_value = 'diabetes', output_item = 'summary' )
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