createClassAndColors | Function to create sorted class labels and colors for... |
createProjectHeader | Create a header for QC report |
createQCreport | Create a pdf output from data slots on QCreportObject |
createQCreportObject | Create initial qcrepotobject structure from input variable |
createXlsx | Create xlsx output file from XCMS output |
doPCA | Perform PCA analysis ot single data set or list of data sets |
doSummaryPlot | Wrapper function to generate PCA plot and RSD statistics plot |
do_variability_list | Calculate RSD% or MAD values per sample group of input... |
do_variability_plot | Plot violin plots from the dolist_object fucntion output |
do_variability_table | Create summary table of list object containing variabilty... |
EICs | Create plots for EICs |
file_type | Check if input is a text file or xlsx file |
get_file_extension | Return file extension from character vector if file paths |
getPeaklistW4M | This function prepares peaklist object from xcms output |
locate_raw_files | Locate raw LC/MS raw files on local files system and align... |
meta_data_from_filenames | Generate meta data from sample filenames |
missingValues | Create QCreport data object to asses missing values |
mzML.startTimeStamp | Extract measurement time stamp fro mzML data file |
PCA | Perform severl PCA models and create plots |
prepare_boxplot_multiple_batches | Prepare data for ggplot barplot |
prepareData | Wrapper function to transform data for statistical analysis |
QC | Create QC quality plots |
RSDstatistics | Create QCreport data object to asses RSD |
RTstabilityAssement | Several diagnostic tables and plot for retention time and m/z... |
sampleSummary | Exctract and return ggplot2 object of EICs for specified xmcm... |
sampleSummaryPlots | Create plots of TIC chromatograms and general sample summary. |
SignalBatchCorrection | Apply signal batch correction |
testData | Testing data set |
theme_Publication | Ggplot publication theme |
XCMS_EIC_plot | Exctract and return ggplot2 object of EICs for specified xcms... |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.