add.cell.cycle: Scores cell cycle phases

In connorhknight/IBRAP_no_decontX: Integrated Benchmarking scRNA-seq Analytical Pipeline

Description

Scores each cell in which cell cycle stage it is currently in.

Usage

add.cell.cycle(object = obj, assay = 'RAW', slot = 'counts')

Arguments

object	IBRAP S4 class object
assay	A character string containing indicating which assay to use
slot	String indicating which slot within the assay should be sourced
transform	Boolean. If raw counts are supplied, this must be TRUE to normalise data

Value

IBRAP S4 class object containing cell cycle assignments and scores for each cell in the metadata

Examples

object <- add.cell.cycle(object = object, 

connorhknight/IBRAP_no_decontX documentation built on Feb. 13, 2022, 2:32 p.m.