createIBRAPobject: Create an IBRAP class object

In connorhknight/IBRAP_no_decontX: Integrated Benchmarking scRNA-seq Analytical Pipeline

Description

Creates and produces project metadata into an IBRAP S4 class object

Usage

createIBRAPobject(counts = counts, original.project = 'project_1', method.name = 'RAW', meta.data = df, min.cells = 3, min.features = 200)

Arguments

counts	Counts matrix
original.project	Character string naming the project
method.name	Character string naming the original method-assay. Default = 'RAW' '(Recommended)'
meta.data	data.frame of extra metadata to append to generated dataframe. Warning: Must be in the same order and colnames
min.cells	Numerical value of the minimum number of cells a gene should be present in
min.features	Numerical value minimum features that should be present in a cell

Value

IBRAP S4 class object containing raw counts and metadata

Examples

object <- createIBRAPobject(counts = counts,
                                      meta.data = metadata_df,
                                      original.project = 'bmmc',
                                      method.name = 'RAW',
                                      min.cells = 3,
                                      min.features = 200)

connorhknight/IBRAP_no_decontX documentation built on Feb. 13, 2022, 2:32 p.m.